Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002496`

染色体: Chr02 坐标: 43391964-43392782 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002496`
名称	SmilChr02G002496
描述	uncharacterized SmilChr02G002496
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	43391964 - 43392782 / `+`

ID 对照

NCBI Gene ID	`LOC131008506`
GeneID	`131008506`
locus_tag	`-`
NCBI Name	`LOC131008506`
原始查询	`LOC131008506`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=43.1; qcov=0.989; evalue=6.24e-72; confidence=medium
Rice	`Os02g0301400` - identity=42.9; qcov=0.283; evalue=3.52e-12; confidence=weak
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT)
InterPro	-
eggNOG	-
NR	GeneID:131008506

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791359.1`
2	Chromosome	染色体	0.00000	`XP_057791359.1`
3	Centromere	着丝粒	0.00000	`XP_057791359.1`
4	Chromatin	染色质	0.00000	`XP_057791359.1`
5	Telomere	端粒	0.00000	`XP_057791359.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:43392072`	`C`	`T`	EMS_canonical_SNV	stop_gained	15	B108,B110,B121,B21,B22,B5,B52,B53,B67,B91,B97,C1,C35,C59,C84
`Chr2:43392073`	`AG`	`A`	1bp_deletion	frameshift_variant	46	A20,A23,A6,A8,B108,B110,B121,B122,B129,B18,B21,B22,B23,B24,B25,B29,B38,B39,B42,B43,B44,B5,B52,B53,B67,B8,B82,B86,B9,B91,B94,B97,C1,C10,C24,C28,C35,C41,C49,C59,C70,C71,C75,C84,D1,D5
`Chr2:43392113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr2:43392144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B36,B51,C37
`Chr2:43392175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr2:43392177`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B13,D9
`Chr2:43392177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,D9
`Chr2:43392181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B93,C25,D9
`Chr2:43392193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr2:43392194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B27,B93,C22,C25,C38
`Chr2:43392201`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B111,B114,B134,D11
`Chr2:43392201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B111,B114,B134,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791359.1

272 aa

136

272

Dimer_Tnp_hAT

PF05699 Dimer_Tnp_hAT 189-240 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791359.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	189	240	3.5e-06	27.4	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935376.1
ATGACTACTATATTTGGGTACACTAATGATTTGTGTCTTGCTTTGCGAAGAAGAGATCAAGATATTGTTAGTGCTATGAGACTTGTCACTTTGACCAAAGTGACATTACAGAAAATGAGAGACAATGGATGGGAGACTCACTTGAATAAGGTAATCTCATTTTGCAATAATAATGAGATTGTTGTTCCGAATATGGAGGCTTGTTATATCCCTCAAGGAAGATCAAAGCGGTTTGCTCAACAAGTTTCATATCTTCATCA...

CDS

1 records

下载 CDS FASTA

LOC131008506
ATGACTACTATATTTGGGTACACTAATGATTTGTGTCTTGCTTTGCGAAGAAGAGATCAAGATATTGTTAGTGCTATGAGACTTGTCACTTTGACCAAAGTGACATTACAGAAAATGAGAGACAATGGATGGGAGACTCACTTGAATAAGGTAATCTCATTTTGCAATAATAATGAGATTGTTGTTCCGAATATGGAGGCTTGTTATATCCCTCAAGGAAGATCAAAGCGGTTTGCTCAACAAGTTTCATATCTTCATCA...

Protein

1 records

下载 Protein FASTA

XP_057791359.1
MTTIFGYTNDLCLALRRRDQDIVSAMRLVTLTKVTLQKMRDNGWETHLNKVISFCNNNEIVVPNMEACYIPQGRSKRFAQQVSYLHHFRVDVFIEVIDLLLQELDNRFDEVNMELLICMTSLNPKDGFSSYDKEKVLKLATFYPSEFSSIDLSTVECQLDIFMEDMRRDGEFKNLEDISSLSMKLVETKRHMTYPLVFLLIRLVLILLVATTRVERVFSGMTYVKNKLRNSIADQVLNDCLDTLIEKDMFLQVSDDEVVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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