当前解析结果
SmilChr02G004522| 统一新 Gene ID | SmilChr02G004522 |
|---|---|
| 名称 | SmilChr02G004522 |
| 描述 | CBL-interacting serine/threonine-protein kinase 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 67778925 - 67780760 / + |
| NCBI Gene ID | LOC131008513 |
|---|---|
| GeneID | 131008513 |
| locus_tag | - |
| NCBI Name | LOC131008513 |
| 原始查询 | LOC131008513 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 5-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 5-like |
| Arabidopsis | AT5G25110 (CIPK25)CBL-interacting protein kinase 25 [Source:NCBI gene (formerly Entrezgene);Acc:832582] identity=69.2; qcov=0.982; evalue=0; confidence=high |
| Rice | Os09g0418000 (OsCIPK16)- identity=62.3; qcov=0.977; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008513 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057791367.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791367.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057791367.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057791367.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791367.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:67779345 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C31 |
Chr2:67779345 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C31 |
Chr2:67779682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B46,B48,B89,C40 |
Chr2:67779919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr2:67780159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B33,C85 |
Chr2:67780220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr2:67780268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B120,C20 |
Chr2:67780291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:67780341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr2:67780375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr2:67780407 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:67780408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791367.1PF00069
Pkinase 17-271 aa
PF07714
PK_Tyr_Ser-Thr 18-267 aa
PF03822
NAF 304-359 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791367.1 |
Pfam | PF00069 |
Pkinase | Domain | 17 | 271 | 7.4e-78 | 262.3 | Protein kinase domain |
XP_057791367.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 18 | 267 | 3.8e-40 | 138.5 | Protein tyrosine and serine/threonine kinase |
XP_057791367.1 |
Pfam | PF03822 |
NAF | Domain | 304 | 359 | 2.7e-17 | 63.4 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。