当前解析结果
SmilChr02G004526| 统一新 Gene ID | SmilChr02G004526 |
|---|---|
| 名称 | SmilChr02G004526 |
| 描述 | ABC transporter C family member 13 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 67842087 - 67857646 / - |
| NCBI Gene ID | LOC131008518 |
|---|---|
| GeneID | 131008518 |
| locus_tag | - |
| NCBI Name | LOC131008518 |
| 原始查询 | LOC131008518 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter C family member 13 |
| 产物 | ABC transporter C family member 13 |
| Arabidopsis | AT2G07680 (ABCC13)multidrug resistance-associated protein 11 [Source:NCBI gene (formerly Entrezgene);Acc:815414] identity=61.7; qcov=0.972; evalue=0; confidence=high |
| Rice | Os04g0620000 (MRP1)- identity=34.7; qcov=0.859; evalue=0; confidence=low |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008518 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057791374.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057791374.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057791374.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057791374.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791374.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:67842870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:67843143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr2:67845345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,C71,D3 |
Chr2:67846604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr2:67846871 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B93,C2,D10,D6 |
Chr2:67848494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B33,C8,C85,D7 |
Chr2:67849112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C2 |
Chr2:67854143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr2:67856407 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr2:67856881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B36,B82,B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791374.1PF00664
ABC_membrane 302-569 aa
PF00005
ABC_tran 642-775 aa
PF00664
ABC_membrane 916-1161 aa
PF00005
ABC_tran 1253-1400 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791374.1 |
Pfam | PF00664 |
ABC_membrane | Family | 302 | 569 | 2.1e-62 | 212.0 | ABC transporter transmembrane region |
XP_057791374.1 |
Pfam | PF00005 |
ABC_tran | Domain | 642 | 775 | 6.1e-46 | 157.1 | ABC transporter |
XP_057791374.1 |
Pfam | PF00664 |
ABC_membrane | Family | 916 | 1161 | 2.1e-62 | 212.0 | ABC transporter transmembrane region |
XP_057791374.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1253 | 1400 | 6.1e-46 | 157.1 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。