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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004532

染色体: Chr02 坐标: 67890055-67893534 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004532
名称SmilChr02G004532
描述probable cinnamyl alcohol dehydrogenase 1
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向67890055 - 67893534 / -

ID 对照

NCBI Gene IDLOC131008524
GeneID131008524
locus_tag-
NCBI NameLOC131008524
原始查询LOC131008524

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable cinnamyl alcohol dehydrogenase 1
产物probable cinnamyl alcohol dehydrogenase 1
ArabidopsisAT1G72680 (CAD1)
cinnamyl-alcohol dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:843600]
identity=71.7; qcov=0.992; evalue=0; confidence=high
RiceOs10g0194200 (OsCAD1)
-
identity=67.8; qcov=1; evalue=3.66e-177; confidence=high
GOGO:0008270 (zinc ion binding); GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGGsmil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00107 (ADH_zinc_N); PF08240 (ADH_N)
InterPro-
eggNOG-
NRGeneID:131008524

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057791381.1
2 Cytosol 细胞质基质 0.60000 XP_057791381.1
3 Nucleus 细胞核 0.20000 XP_057791381.1
4 Chromosome 染色体 0.00000 XP_057791381.1
5 Centromere 着丝粒 0.00000 XP_057791381.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:67891955 G A EMS_canonical_SNV CDS_variant 3 B26,B8,C77
Chr2:67893185 TTC T 2bp_deletion frameshift_variant 53 A10,A13,A15,A19,A22,B10,B104,B105,B112,B115,B117,B126,B134,B139,B14,B140,B23,B26,B28,B3,B31,B46,B49,B52,B69,B75,B76,B8,B81,B9,C1,C14,C16,C17,C21,C27,C29,C35,C36,C37,C4,C41,C45,C54,C58,C6,C61,C77,C79,C83,C86,D1,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791381.1
369 aa
N
1
184
369
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 47-166 aa PF00107 ADH_zinc_N 206-328 aa
XP_057791382.1
369 aa
N
1
184
369
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 47-166 aa PF00107 ADH_zinc_N 206-328 aa
XP_057791383.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791384.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791385.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791386.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791387.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791388.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791389.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791390.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791391.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791392.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791394.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791395.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791381.1 Pfam PF08240 ADH_N Domain 47 166 1.4e-24 87.0 Alcohol dehydrogenase GroES-like domain
XP_057791381.1 Pfam PF00107 ADH_zinc_N Domain 206 328 3.3e-18 66.6 Zinc-binding dehydrogenase
XP_057791382.1 Pfam PF08240 ADH_N Domain 47 166 1.4e-24 87.0 Alcohol dehydrogenase GroES-like domain
XP_057791382.1 Pfam PF00107 ADH_zinc_N Domain 206 328 3.3e-18 66.6 Zinc-binding dehydrogenase
XP_057791383.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791383.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791384.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791384.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791385.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791385.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791386.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791386.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791387.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791387.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791388.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791388.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791389.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791389.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791390.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791390.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791391.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791391.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791392.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791392.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791394.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791394.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791395.1 Pfam PF08240 ADH_N Domain 31 150 1.3e-24 87.1 Alcohol dehydrogenase GroES-like domain
XP_057791395.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

14 records

下载 cDNA FASTA
XM_057935405.1
TATCCCTATAATTTAAAAAATAGAGAAAGTGTCGTAACTTAAGTGGTCCTACATAGTGTAGATGCCCTTAATCCATTTGCAAATTGCAGGTGCACTTTGATTAAGATTACGTTTGTGAATCTATCTGAATCCTGATCCCGTTTATCAACAGCTTCATCTACTCAGTGGAGAAACCTGTAACAGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCG...
XM_057935408.1
ATTTGCAAATTGCAGGTGCACTTTGATTAAGATTACGTTTGTGAATCTATCTGAATCCTGATCCCGTTTATCAACAGCTTCATCTACTCAGTGGAGAAACCGTAATTTCCTTCCTTACTACAATGTAACAGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCGATTTAGTCGCAGGTCTGTTGGTCCTGATGATATTTCTATAAGTATTCTGTAC...

CDS

14 records

下载 CDS FASTA
LOC131008524
ATGAAAAAGAGAGAATATTTATTGCTTTCGATGACTACGTTGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCGATTTAGTCGCAGGTCTGTTGGTCCTGATGATATTTCTATAAGTATTCTGTACTGCGGAGTTTGTTATGCTGATGTTGCCTGGACTAGAAACGTAATGGGCCATTCAAATTATCCTTTGGTGCCCGGACATGAGATTGTTGG...
LOC131008524
ATGAAAAAGAGAGAATATTTATTGCTTTCGATGACTACGTTGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCGATTTAGTCGCAGGTCTGTTGGTCCTGATGATATTTCTATAAGTATTCTGTACTGCGGAGTTTGTTATGCTGATGTTGCCTGGACTAGAAACGTAATGGGCCATTCAAATTATCCTTTGGTGCCCGGACATGAGATTGTTGG...

Protein

14 records

下载 Protein FASTA
XP_057791381.1
MKKREYLLLSMTTLIEMASENGECLGWAARDPSGTLSPYRFSRRSVGPDDISISILYCGVCYADVAWTRNVMGHSNYPLVPGHEIVGVVKEVGSNVDRFKVGEHVGVGTYVNSCRQCEYCDSGIEVHCTKGSVYTFDGVDVDGTITKGGYSSYIVVHQRYCFRIPENYPPELAAPLLCAGITVYTPMVRHNMNQPGKSLGVIGLGGLGHLAVKFGKAFGLKVTVFSTSISKKDEALNLLGADCFVISSNEKEMKALENSL...
XP_057791382.1
MKKREYLLLSMTTLIEMASENGECLGWAARDPSGTLSPYRFSRRSVGPDDISISILYCGVCYADVAWTRNVMGHSNYPLVPGHEIVGVVKEVGSNVDRFKVGEHVGVGTYVNSCRQCEYCDSGIEVHCTKGSVYTFDGVDVDGTITKGGYSSYIVVHQRYCFRIPENYPPELAAPLLCAGITVYTPMVRHNMNQPGKSLGVIGLGGLGHLAVKFGKAFGLKVTVFSTSISKKDEALNLLGADCFVISSNEKEMKALENSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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