Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004538`

染色体: Chr02 坐标: 67957631-67960798 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004538`
名称	SmilChr02G004538
描述	putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	67957631 - 67960798 / `+`

ID 对照

NCBI Gene ID	`LOC131008532`
GeneID	`131008532`
locus_tag	`-`
NCBI Name	`LOC131008532`
原始查询	`LOC131008532`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130
产物	putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130
Arabidopsis	`AT2G24130` (AT2G24130) Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816947] identity=46.1; qcov=0.965; evalue=0; confidence=high
Rice	`Os09g0423200` - identity=50.6; qcov=0.893; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:131008532

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791420.1`
2	Nucleus	细胞核	0.00000	`XP_057791420.1`
3	Chromosome	染色体	0.00000	`XP_057791420.1`
4	Centromere	着丝粒	0.00000	`XP_057791420.1`
5	Chromatin	染色质	0.00000	`XP_057791420.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:67957642`	`C`	`CCA`	2bp_insertion	frameshift_variant	12	B111,B118,B124,B19,B45,B5,B75,B84,B99,C28,C63,C82
`Chr2:67957674`	`T`	`TC`	1bp_insertion	frameshift_variant	141	A14,A15,A18,A2,A20,A21,A24,A3,A4,A6,A8,B100,B103,B108,B109,B11,B110,B111,B112,B114,B115,B118,B119,B121,B122,B123,B124,B125,B126,B127,B131,B132,B135,B136,B137,B138,B140,B15,B16,B17,B18,B19,B20,B21,B23,B24,B31,B33,B35,B38,B39,B40,B42,B43,B45,B47,B49,B5,B51,B52,B53,B54,B6,B60,B62,B63,B64,B66,B67,B7,B71,B72,B73,B75,B77,B79,B80,B83,B84,B85,B87,B9,B90,B91,B95,B99,C10,C11,C12,C13,C19,C23,C24,C25,C28,C30,C32,C33,C35,C36,C37,C39,C42,C43,C44,C46,C48,C51,C52,C54,C55,C57,C59,C6,C61,C62,C63,C64,C65,C66,C68,C69,C70,C71,C73,C74,C75,C76,C78,C8,C80,C82,C85,D1,D10,D11,D5,D6,D7,D8,D9
`Chr2:67957717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B64,C5
`Chr2:67957725`	`A`	`AT`	1bp_insertion	frameshift_variant	71	A14,A18,A2,A20,A24,A3,A4,A6,B109,B113,B119,B122,B123,B124,B126,B131,B135,B136,B138,B15,B16,B20,B21,B23,B24,B30,B31,B32,B33,B38,B42,B49,B5,B51,B63,B66,B67,B7,B72,B73,B76,B77,B80,B83,B84,B85,B87,B9,B95,C10,C12,C13,C19,C25,C32,C35,C37,C39,C44,C51,C54,C59,C66,C68,C70,C75,C78,D1,D6,D8,D9
`Chr2:67957882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:67957932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:67957936`	`A`	`AT`	1bp_insertion	frameshift_variant	3	B125,B92,C82
`Chr2:67957936`	`A`	`AT`	1bp_insertion	CDS_variant	3	B125,B92,C82
`Chr2:67957941`	`C`	`CA`	1bp_insertion	frameshift_variant	3	B125,B92,C82
`Chr2:67957941`	`C`	`CA`	1bp_insertion	CDS_variant	3	B125,B92,C82
`Chr2:67957943`	`GTC`	`G`	2bp_deletion	frameshift_variant	3	B125,B92,C82
`Chr2:67957943`	`GTC`	`G`	2bp_deletion	CDS_variant	3	B125,B92,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791420.1

986 aa

493

986

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 43-81 aa PF00560 LRR_1 111-132 aa PF00560 LRR_1 185-206 aa PF00560 LRR_1 388-407 aa PF00560 LRR_1 434-455 aa PF00560 LRR_1 461-480 aa PF00560 LRR_1 483-504 aa PF00560 LRR_1 555-571 aa PF00069 Pkinase 672-885 aa PF07714 PK_Tyr_Ser-Thr 674-956 aa

XP_057791422.1

879 aa

440

879

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791420.1`	Pfam	`PF08263`	LRRNT_2	Family	43	81	5.3e-12	46.5	Leucine rich repeat N-terminal domain
`XP_057791420.1`	Pfam	`PF00560`	LRR_1	Repeat	111	132	8.5e-42	132.8	Leucine Rich Repeat
`XP_057791420.1`	Pfam	`PF00560`	LRR_1	Repeat	185	206	8.5e-42	132.8	Leucine Rich Repeat
`XP_057791420.1`	Pfam	`PF00560`	LRR_1	Repeat	388	407	8.5e-42	132.8	Leucine Rich Repeat
`XP_057791420.1`	Pfam	`PF00560`	LRR_1	Repeat	434	455	8.5e-42	132.8	Leucine Rich Repeat
`XP_057791420.1`	Pfam	`PF00560`	LRR_1	Repeat	461	480	8.5e-42	132.8	Leucine Rich Repeat
`XP_057791420.1`	Pfam	`PF00560`	LRR_1	Repeat	483	504	8.5e-42	132.8	Leucine Rich Repeat
`XP_057791420.1`	Pfam	`PF00560`	LRR_1	Repeat	555	571	8.5e-42	132.8	Leucine Rich Repeat
`XP_057791420.1`	Pfam	`PF00069`	Pkinase	Domain	672	885	9.1e-40	137.4	Protein kinase domain
`XP_057791420.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	674	956	2.2e-40	139.3	Protein tyrosine and serine/threonine kinase
`XP_057791422.1`	Pfam	`PF08263`	LRRNT_2	Family	43	81	4.8e-12	46.7	Leucine rich repeat N-terminal domain
`XP_057791422.1`	Pfam	`PF00560`	LRR_1	Repeat	111	132	5.2e-43	136.4	Leucine Rich Repeat
`XP_057791422.1`	Pfam	`PF00560`	LRR_1	Repeat	185	206	5.2e-43	136.4	Leucine Rich Repeat
`XP_057791422.1`	Pfam	`PF00560`	LRR_1	Repeat	388	407	5.2e-43	136.4	Leucine Rich Repeat
`XP_057791422.1`	Pfam	`PF00560`	LRR_1	Repeat	434	455	5.2e-43	136.4	Leucine Rich Repeat
`XP_057791422.1`	Pfam	`PF00560`	LRR_1	Repeat	461	480	5.2e-43	136.4	Leucine Rich Repeat
`XP_057791422.1`	Pfam	`PF00560`	LRR_1	Repeat	483	504	5.2e-43	136.4	Leucine Rich Repeat
`XP_057791422.1`	Pfam	`PF00560`	LRR_1	Repeat	555	571	5.2e-43	136.4	Leucine Rich Repeat
`XP_057791422.1`	Pfam	`PF00069`	Pkinase	Domain	672	853	1.3e-30	107.4	Protein kinase domain
`XP_057791422.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	674	829	4.5e-30	105.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935439.1
ATGCACCTCTCCCAACTTTGGTGGAAACAAATCATCCCCATTATATCAATGCACAGAGGCAGCAGTATGTTCATATTTATCTGTGTGATGCACCATTTCCATACCACATTAGGGCACCACTCTCTGCACACCGATAGAGCTGCTCTACTAGCATTCAAGAACTCCATAACATCCGACCCACATTCAAGGCTCGCCAACTGGGACGAGCTCACGGCCGTCTGCAACTTCACGGGCGTGCAATGCGGCCTCATGCAGCGCCG...

XM_057935437.1
ATGCACCTCTCCCAACTTTGGTGGAAACAAATCATCCCCATTATATCAATGCACAGAGGCAGCAGTATGTTCATATTTATCTGTGTGATGCACCATTTCCATACCACATTAGGGCACCACTCTCTGCACACCGATAGAGCTGCTCTACTAGCATTCAAGAACTCCATAACATCCGACCCACATTCAAGGCTCGCCAACTGGGACGAGCTCACGGCCGTCTGCAACTTCACGGGCGTGCAATGCGGCCTCATGCAGCGCCG...

CDS

2 records

下载 CDS FASTA

LOC131008532
ATGCACCTCTCCCAACTTTGGTGGAAACAAATCATCCCCATTATATCAATGCACAGAGGCAGCAGTATGTTCATATTTATCTGTGTGATGCACCATTTCCATACCACATTAGGGCACCACTCTCTGCACACCGATAGAGCTGCTCTACTAGCATTCAAGAACTCCATAACATCCGACCCACATTCAAGGCTCGCCAACTGGGACGAGCTCACGGCCGTCTGCAACTTCACGGGCGTGCAATGCGGCCTCATGCAGCGCCG...

Protein

2 records

下载 Protein FASTA

XP_057791420.1
MHLSQLWWKQIIPIISMHRGSSMFIFICVMHHFHTTLGHHSLHTDRAALLAFKNSITSDPHSRLANWDELTAVCNFTGVQCGLMQRRVVYLNLNASGLVGSLPPVVSNLTQLRYLHLDDNNFIGPIPWEISSIRNLVELKLGSNNLQGQIPVSFSLLSKLKLIHLYNNSLTGTIPAALFANCTGLKNIDFSMNQLTGRIPFEIGNCPDLWTVSLYSNQLVGEIPSSLGNATGMMSLDVENNSISGQLPADIISRFVDLSY...

XP_057791422.1
MHLSQLWWKQIIPIISMHRGSSMFIFICVMHHFHTTLGHHSLHTDRAALLAFKNSITSDPHSRLANWDELTAVCNFTGVQCGLMQRRVVYLNLNASGLVGSLPPVVSNLTQLRYLHLDDNNFIGPIPWEISSIRNLVELKLGSNNLQGQIPVSFSLLSKLKLIHLYNNSLTGTIPAALFANCTGLKNIDFSMNQLTGRIPFEIGNCPDLWTVSLYSNQLVGEIPSSLGNATGMMSLDVENNSISGQLPADIISRFVDLSY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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