Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004552`

染色体: Chr02 坐标: 68045485-68048680 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004552`
名称	SmilChr02G004552
描述	uncharacterized SmilChr02G004552
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68045485 - 68048680 / `-`

ID 对照

NCBI Gene ID	`LOC131008546`
GeneID	`131008546`
locus_tag	`-`
NCBI Name	`LOC131008546`
原始查询	`LOC131008546`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835176]; symbol=AT5G51030; hit=AT5G51030; species=arabidopsis; confidence=high
产物	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835176]; symbol=AT5G51030; hit=AT5G51030; species=arabidopsis; confidence=high
Arabidopsis	`AT5G51030` (AT5G51030) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835176] identity=69.4; qcov=0.99; evalue=1.71e-170; confidence=high
Rice	`Os01g0929500` - identity=58.8; qcov=0.994; evalue=1.02e-126; confidence=high
GO	GO:0016020 (membrane); GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	smil00590 (Arachidonic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00790 (Folate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:131008546

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057791440.1`
2	Cytoplasm	细胞质	0.20000	`XP_057791440.1`
3	Nucleus	细胞核	0.00000	`XP_057791440.1`
4	Chromosome	染色体	0.00000	`XP_057791440.1`
5	Centromere	着丝粒	0.00000	`XP_057791440.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68046105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B14,D11
`Chr2:68046207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:68046249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:68046315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C16,C21
`Chr2:68046730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:68046768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,C16,C21
`Chr2:68047260`	`C`	`CT`	1bp_insertion	frameshift_variant	8	A13,B11,B28,B41,B88,C34,C5,C53
`Chr2:68047328`	`TG`	`T`	1bp_deletion	frameshift_variant	1	D2
`Chr2:68047328`	`TG`	`T`	1bp_deletion	CDS_variant	1	D2
`Chr2:68047330`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	D2
`Chr2:68047330`	`TAA`	`T`	2bp_deletion	CDS_variant	1	D2
`Chr2:68047335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791440.1

313 aa

156

313

adh_short

Epimerase

adh_short_C2

PF00106 adh_short 38-177 aa PF08659 KR 39-155 aa PF01370 Epimerase 40-172 aa PF13561 adh_short_C2 43-176 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791440.1`	Pfam	`PF00106`	adh_short	Domain	38	177	5.7e-41	140.9	short chain dehydrogenase
`XP_057791440.1`	Pfam	`PF08659`	KR	Family	39	155	6.2e-09	36.7	KR domain
`XP_057791440.1`	Pfam	`PF01370`	Epimerase	Family	40	172	2.7e-09	37.5	NAD dependent epimerase/dehydratase family
`XP_057791440.1`	Pfam	`PF13561`	adh_short_C2	Domain	43	176	6.1e-30	105.2	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935457.1
TACCGGGAAAGAATTCATGTGTTCTCCCATTTTCTCTATCTCTCTCTACACAAAAACAAACAAAAAAACATAAACTCAAACCGAAAAAAAGAAAAGAAAAAGAAAACGAGAATCAATTTGTGTCGTAGTTATGGATAAAAAAGACAAAGCAAAAGAGAAGAAGGAAAAGAGGCGCCAAGAGATCTCTCTCCTCCGTACCATCCCTTACTCCGATCATCAAAGATGGTGGACCTCCGAAACTATAGCTGTTGTGACTGGTG...

CDS

1 records

下载 CDS FASTA

LOC131008546
ATGGATAAAAAAGACAAAGCAAAAGAGAAGAAGGAAAAGAGGCGCCAAGAGATCTCTCTCCTCCGTACCATCCCTTACTCCGATCATCAAAGATGGTGGACCTCCGAAACTATAGCTGTTGTGACTGGTGCAAATAGGGGGATCGGATTTGAGATTGTGCACCAGCTCGCGTTGCACGGGATCACAGTCATTCTCACATCACGAGAGACAGGAGTTGGACAAGAAGCAGCAAAAGTCTTACAAGAAGGAGGTTTGAATGT...

Protein

1 records

下载 Protein FASTA

XP_057791440.1
MDKKDKAKEKKEKRRQEISLLRTIPYSDHQRWWTSETIAVVTGANRGIGFEIVHQLALHGITVILTSRETGVGQEAAKVLQEGGLNVVFHQLDIIDPPSIEAFVEWVKEQYGGVDILINNAGVNYNAGSDNSVEHAEQVIETNYFGTKNMIKAMIPLMRPSEPGARIVNVSSKLGRLSGRRNRIENAEIRKKLENDELLSEELIDEVMNTFLQQVKDGTWKQGGWPHVFTDYSLSKLAVNTYTRLLAREFASRPEGQKIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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