当前解析结果
SmilChr02G004554| 统一新 Gene ID | SmilChr02G004554 |
|---|---|
| 名称 | SmilChr02G004554 |
| 描述 | calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 68055111 - 68058729 / - |
| NCBI Gene ID | LOC131008548 |
|---|---|
| GeneID | 131008548 |
| locus_tag | - |
| NCBI Name | LOC131008548 |
| 原始查询 | LOC131008548 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 2-like |
| 产物 | calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 2-like |
| Arabidopsis | AT5G51050 (APC2)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:835178] identity=70.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0604500- identity=68.3; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0005347 (ATP transmembrane transporter activity); GO:0005509 (calcium ion binding); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr); PF13202 (EF-hand_5); PF13499 (EF-hand_7); PF13833 (EF-hand_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008548 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057791443.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057791443.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057791443.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057791443.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791443.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:68055459 |
GT |
G |
1bp_deletion | frameshift_variant | 21 | A11,A2,A20,A22,A25,A3,B101,B102,B122,B29,B57,B58,B61,B62,B65,B69,B79,B93,C18,C39,C49 |
Chr2:68055462 |
TTC |
T |
2bp_deletion | frameshift_variant | 21 | A11,A2,A20,A22,A25,A3,B101,B102,B122,B29,B57,B58,B61,B62,B65,B69,B79,B93,C18,C39,C49 |
Chr2:68055466 |
T |
TGG |
2bp_insertion | frameshift_variant | 21 | A11,A2,A20,A22,A25,A3,B101,B102,B122,B29,B57,B58,B61,B62,B65,B69,B79,B93,C18,C39,C49 |
Chr2:68056090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C28,D10 |
Chr2:68056384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:68056486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B106,C29,C60,D4 |
Chr2:68058304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:68058393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,C60,D4 |
Chr2:68058558 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B48,B89,C40,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791443.1PF13499
EF-hand_7 94-150 aa
PF13833
EF-hand_8 107-155 aa
PF13202
EF-hand_5 138-155 aa
PF00153
Mito_carr 192-278 aa
PF00153
Mito_carr 287-373 aa
PF00153
Mito_carr 383-466 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791443.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 94 | 150 | 8.1e-18 | 65.3 | EF-hand domain pair |
XP_057791443.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 107 | 155 | 3.2e-07 | 30.7 | EF-hand domain pair |
XP_057791443.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 138 | 155 | 3.7e-07 | 30.0 | EF hand |
XP_057791443.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 192 | 278 | 2.4e-74 | 245.9 | Mitochondrial carrier protein |
XP_057791443.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 287 | 373 | 2.4e-74 | 245.9 | Mitochondrial carrier protein |
XP_057791443.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 383 | 466 | 2.4e-74 | 245.9 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。