Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004565`

染色体: Chr02 坐标: 68171867-68762800 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004565`
名称	SmilChr02G004565
描述	uncharacterized SmilChr02G004565
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68171867 - 68762800 / `+`

ID 对照

NCBI Gene ID	`LOC131008566`
GeneID	`131008566`
locus_tag	`-`
NCBI Name	`LOC131008566`
原始查询	`LOC131008566`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	forkhead-associated domain-containing protein / FHA domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830631]; symbol=AT5G07400; hit=AT5G07400; species=arabidopsis; confidence=medium
产物	forkhead-associated domain-containing protein / FHA domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830631]; symbol=AT5G07400; hit=AT5G07400; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G07400` (AT5G07400) forkhead-associated domain-containing protein / FHA domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830631] identity=44.8; qcov=0.964; evalue=0; confidence=medium
Rice	`Os04g0403400` - identity=44.7; qcov=0.899; evalue=0; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006281 (DNA repair); GO:0008081 (phosphoric diester hydrolase activity); GO:0008270 (zinc ion binding); GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
KEGG	-
Pfam	PF00498 (FHA); PF06087 (Tyr-DNA_phospho); PF08797 (HIRAN)
InterPro	-
eggNOG	-
NR	GeneID:131008566

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791471.1`
2	Chromosome	染色体	0.00000	`XP_057791471.1`
3	Centromere	着丝粒	0.00000	`XP_057791471.1`
4	Chromatin	染色质	0.00000	`XP_057791471.1`
5	Telomere	端粒	0.00000	`XP_057791471.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68172120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:68172122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B13,B94
`Chr2:68172878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr2:68173722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr2:68174445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B107,D6
`Chr2:68174518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B41,B69,C45,C83
`Chr2:68174684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:68175675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B86,D10
`Chr2:68175730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B48,B89,C40,C75
`Chr2:68175770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:68177519`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B126
`Chr2:68177519`	`GA`	`G`	1bp_deletion	CDS_variant	1	B126

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791471.1

1085 aa

542

1085

FHA

Tyr-DNA_phospho

HIRAN

Tyr-DNA_phospho

PF00498 FHA 68-151 aa PF06087 Tyr-DNA_phospho 380-599 aa PF08797 HIRAN 662-732 aa PF06087 Tyr-DNA_phospho 779-1005 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791471.1`	Pfam	`PF00498`	FHA	Family	68	151	3.8e-12	47.2	FHA domain
`XP_057791471.1`	Pfam	`PF06087`	Tyr-DNA_phospho	Domain	380	599	1.9e-48	166.1	Tyrosyl-DNA phosphodiesterase
`XP_057791471.1`	Pfam	`PF08797`	HIRAN	Domain	662	732	4.6e-08	33.5	HIRAN domain
`XP_057791471.1`	Pfam	`PF06087`	Tyr-DNA_phospho	Domain	779	1005	1.9e-48	166.1	Tyrosyl-DNA phosphodiesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009096314.1
ATTTGGAGGGAAAATTTTCAATTTTCATTTGTATATATGATCTACTTCGTACAACTGTAGCTATTCATTGTTGATTTGATTCATTTATTCAAGAAATTCTTTGTTTTCTTTGCCATCCAGATACTGCTCCGATCGCGCTTAGTGCAATTTTCCCTCCTTTATCATCATTGAGTCAATTATTATGAGCATTACTTCAGATTCTTCTTTTTCCTTCCAAATCAGAAAACGGCACCAATTCGATTTACCTGTTCAGCCGCATA...

XM_057935488.1
ATTTGGAGGGAAAATTTTCAATTTTCATTTGTATATATGATCTACTTCGTACAACTGTAGCTATTCATTGTTGATTTGATTCATTTATTCAAGAAATTCTTTGTTTTCTTTGCCATCCAGATACTGCTCCGATCGCGCTTAGTGCAATTTTCCCTCCTTTATCATCATTGAGTCAATTATTATGAGCATTACTTCAGATTCTTCTTTTTCCTTCCAAATCAGAAAACGGCACCAATTCGATTTACCTGTTCAGCCGCATA...

CDS

1 records

下载 CDS FASTA

LOC131008566
ATGAGCATTACTTCAGATTCTTCTTTTTCCTTCCAAATCAGAAAACGGCACCAATTCGATTTACCTGTTCAGCCGCATAAAAAGCACCGCGGAAACACTGTTAGAGTTGCAATCTTGCATATCAAAACCCTCAATCTGCCATTAATTTCGAGTTCCACCACTCAATTTTGCGAATCCCTCGTTCTGGAACCCTTCAAACCCTATACCATTGGCCGGAGATTGGAGCTGTGTGATTTTATTTTTACTGACGGTAGAGTCAG...

Protein

1 records

下载 Protein FASTA

XP_057791471.1
MSITSDSSFSFQIRKRHQFDLPVQPHKKHRGNTVRVAILHIKTLNLPLISSSTTQFCESLVLEPFKPYTIGRRLELCDFIFTDGRVSKRHCQLYFDSLEKKIYLSDGFVPGCTGSNGSFSSFSAKISTNGVFVNGSRINGVVELQVGDVVGLVCWNKEACRLRPRIGFLVEKAVFAEEIDYRSSIQLDSCNIDSKQTSFVVRRCRGTDNTSLLLSWCRDILCSDDPIYYIRKFIDINRKNNISFENGSKECLRSSSDNGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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