Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004611

染色体: Chr02 坐标: 68627810-68632962 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004611
名称SmilChr02G004611
描述pentatricopeptide repeat-containing protein At5g61990, mitochondrial
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向68627810 - 68632962 / +

ID 对照

NCBI Gene IDLOC131008567
GeneID131008567
locus_tag-
NCBI NameLOC131008567
原始查询LOC131008567

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g61990, mitochondrial
产物pentatricopeptide repeat-containing protein At5g61990%2C mitochondrial
ArabidopsisAT5G61990 (AT5G61990)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836320]
identity=37; qcov=0.983; evalue=0; confidence=medium
RiceOs07g0300200 (OsPILS5)
-
identity=36.2; qcov=0.951; evalue=0; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131008567

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057791472.1
2 Nucleus 细胞核 0.00000 XP_057791472.1
3 Chromosome 染色体 0.00000 XP_057791472.1
4 Centromere 着丝粒 0.00000 XP_057791472.1
5 Chromatin 染色质 0.00000 XP_057791472.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:68628100 C T EMS_canonical_SNV CDS_variant 1 C47
Chr2:68628641 G A EMS_canonical_SNV CDS_variant 1 B32
Chr2:68628689 G A EMS_canonical_SNV CDS_variant 1 C86
Chr2:68628854 G A EMS_canonical_SNV CDS_variant 2 B93,C2
Chr2:68628971 C T EMS_canonical_SNV CDS_variant 1 B33
Chr2:68629099 G A EMS_canonical_SNV CDS_variant 2 B93,C2
Chr2:68629271 C T EMS_canonical_SNV CDS_variant 3 B13,B14,B25
Chr2:68629302 G A EMS_canonical_SNV CDS_variant 1 D6
Chr2:68629557 G A EMS_canonical_SNV CDS_variant 1 C47
Chr2:68629718 G A EMS_canonical_SNV CDS_variant 2 B94,C72
Chr2:68629943 C T EMS_canonical_SNV CDS_variant 1 C4
Chr2:68629994 TTC T 2bp_deletion frameshift_variant 1 A21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791472.1
1021 aa
N
1
510
1021
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_long
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_2
PPR_1
PPR
C
PF01535 PPR 157-176 aa PF13041 PPR_2 189-234 aa PF13812 PPR_3 217-265 aa PF12854 PPR_1 218-249 aa PF01535 PPR 223-253 aa PF13041 PPR_2 227-269 aa PF12854 PPR_1 251-279 aa PF13041 PPR_2 255-304 aa PF01535 PPR 259-288 aa PF13812 PPR_3 279-337 aa PF12854 PPR_1 286-318 aa PF01535 PPR 293-323 aa PF13041 PPR_2 298-339 aa PF13041 PPR_2 325-374 aa PF01535 PPR 329-358 aa PF17177 PPR_long 338-426 aa PF13812 PPR_3 348-404 aa PF12854 PPR_1 356-388 aa PF13041 PPR_2 361-408 aa PF01535 PPR 364-393 aa PF13812 PPR_3 383-440 aa PF13041 PPR_2 395-443 aa PF01535 PPR 399-420 aa PF13041 PPR_2 430-476 aa PF13812 PPR_3 454-510 aa PF23276 TPR_24 456-556 aa PF12854 PPR_1 461-493 aa PF13041 PPR_2 465-512 aa PF01535 PPR 468-498 aa PF13812 PPR_3 488-547 aa PF13041 PPR_2 500-547 aa PF01535 PPR 504-533 aa PF13812 PPR_3 528-571 aa PF01535 PPR 538-568 aa PF13041 PPR_2 539-584 aa PF13812 PPR_3 562-614 aa PF12854 PPR_1 567-598 aa PF13041 PPR_2 570-619 aa PF01535 PPR 575-602 aa PF17177 PPR_long 579-717 aa PF13041 PPR_2 605-654 aa PF01535 PPR 609-637 aa PF13812 PPR_3 635-685 aa PF12854 PPR_1 636-669 aa PF13041 PPR_2 640-687 aa PF01535 PPR 644-673 aa PF13812 PPR_3 664-722 aa PF12854 PPR_1 671-700 aa PF13041 PPR_2 675-724 aa PF01535 PPR 678-706 aa PF12854 PPR_1 706-739 aa PF13041 PPR_2 710-759 aa PF01535 PPR 713-739 aa PF13812 PPR_3 733-789 aa PF12854 PPR_1 746-774 aa PF13041 PPR_2 748-778 aa PF01535 PPR 749-778 aa PF23276 TPR_24 752-875 aa PF17177 PPR_long 753-904 aa PF13041 PPR_2 780-824 aa PF12854 PPR_1 782-808 aa PF01535 PPR 783-811 aa PF13812 PPR_3 803-860 aa PF12854 PPR_1 812-842 aa PF13041 PPR_2 814-862 aa PF01535 PPR 817-847 aa PF01535 PPR 853-882 aa PF13041 PPR_2 853-897 aa PF12854 PPR_1 880-907 aa PF01535 PPR 887-916 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791472.1 Pfam PF01535 PPR Repeat 157 176 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 189 234 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 217 265 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 218 249 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF01535 PPR Repeat 223 253 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 227 269 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 251 279 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 255 304 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 259 288 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 279 337 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 286 318 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF01535 PPR Repeat 293 323 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 298 339 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 325 374 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 329 358 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF17177 PPR_long Repeat 338 426 8e-60 202.5 Pentacotripeptide-repeat region of PRORP
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 348 404 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 356 388 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 361 408 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 364 393 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 383 440 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 395 443 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 399 420 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 430 476 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 454 510 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF23276 TPR_24 Repeat 456 556 4.2e-56 189.2 Pentatricopeptide repeat-containing protein
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 461 493 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 465 512 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 468 498 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 488 547 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 500 547 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 504 533 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 528 571 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF01535 PPR Repeat 538 568 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 539 584 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 562 614 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 567 598 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 570 619 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 575 602 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF17177 PPR_long Repeat 579 717 8e-60 202.5 Pentacotripeptide-repeat region of PRORP
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 605 654 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 609 637 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 635 685 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 636 669 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 640 687 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 644 673 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 664 722 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 671 700 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 675 724 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 678 706 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 706 739 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 710 759 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 713 739 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 733 789 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 746 774 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 748 778 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 749 778 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF23276 TPR_24 Repeat 752 875 4.2e-56 189.2 Pentatricopeptide repeat-containing protein
XP_057791472.1 Pfam PF17177 PPR_long Repeat 753 904 8e-60 202.5 Pentacotripeptide-repeat region of PRORP
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 780 824 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 782 808 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF01535 PPR Repeat 783 811 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13812 PPR_3 Repeat 803 860 4.2e-109 357.4 Pentatricopeptide repeat domain
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 812 842 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 814 862 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF01535 PPR Repeat 817 847 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF01535 PPR Repeat 853 882 3.2e-143 457.1 PPR repeat
XP_057791472.1 Pfam PF13041 PPR_2 Repeat 853 897 8.8e-227 734.0 PPR repeat family
XP_057791472.1 Pfam PF12854 PPR_1 Repeat 880 907 5.6e-168 545.0 PPR repeat
XP_057791472.1 Pfam PF01535 PPR Repeat 887 916 3.2e-143 457.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057935489.1
CAAAAACCTTAAGAGAACTTGAAACCCATTTTGAATAATGGGTCTGAGAATTGGGCCCACGTAGTTTGATTTCCCAATTTCCATATGATATCATTTCACGACTCCTGAGAGTGAGAGCTAGCTGAGAAGAAGCAGCGATGGCAATAGCAAGTGCACGCTGATTGTATTGATATGTCCTCTCACGATTTACACCTAAATTGAGAAAGAAAGGATAAACAGTAGTGCAATTGTTCTCGCATCGCCCAAAATGCATACACTCA...

CDS

1 records

下载 CDS FASTA
LOC131008567
ATGCATACACTCATCAGGTGTCAACGCCGCATAATCAACAAAACTCGGCTCTCCTTTCAATCCCACCACTCTTCTCACACCTCTCCACAGATTGAAGCCGCAGCTGCTGAAATCTGCAAGATTCTCAAGCACAACAACTGGCAATTTCTGTTGGAATCGTCGCATTTGCCACAAGACTTGAATCCAGAGGTGGTCCATTCGGTGCTGCAAAAAAGCCATTTTTCGCTTAATCCGCGGCGCCTTATTGATTTCTTCGACTG...

Protein

1 records

下载 Protein FASTA
XP_057791472.1
MHTLIRCQRRIINKTRLSFQSHHSSHTSPQIEAAAAEICKILKHNNWQFLLESSHLPQDLNPEVVHSVLQKSHFSLNPRRLIDFFDWSNRHLGTAQKLHSYSLLALILCSSNLYGPAITVLTKVAEARVPASDILDSILKLCNESERFRSRGIVFELLIDVYRKKGMWNEALAVFLGVKGHSFGISLLCCNSLLKDLLRCGRMESFWKVYGGMLDMRISLDVYTYVSVITAHCKVGNLREAKRVLTEMEENGCNPNLIAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器