Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004596`

染色体: Chr02 坐标: 68481718-68487609 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004596`
名称	SmilChr02G004596
描述	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68481718 - 68487609 / `-`

ID 对照

NCBI Gene ID	`LOC131008570`
GeneID	`131008570`
locus_tag	`-`
NCBI Name	`LOC131008570`
原始查询	`LOC131008570`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like
产物	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B%2C chloroplastic-like
Arabidopsis	`AT5G50920` (CLPC1) CLPC homologue 1 [Source:NCBI gene (formerly Entrezgene);Acc:835165] identity=84.7; qcov=0.986; evalue=0; confidence=high
Rice	`Os12g0230100` (CLPC2) - identity=80.3; qcov=0.998; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0034605 (cellular response to heat)
KEGG	-
Pfam	PF00004 (AAA); PF00158 (Sigma54_activat); PF02151 (UVR); PF02861 (Clp_N); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small); PF17871 (AAA_lid_9)
InterPro	-
eggNOG	-
NR	GeneID:131008570

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057791480.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057791480.1`
3	Nucleus	细胞核	0.00000	`XP_057791480.1`
4	Chromosome	染色体	0.00000	`XP_057791480.1`
5	Centromere	着丝粒	0.00000	`XP_057791480.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68482151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,C4,C75,D1
`Chr2:68482155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B133,B27,B44
`Chr2:68482461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C29
`Chr2:68482488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:68482782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B22,B99,C1,D6
`Chr2:68482886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B82,B86
`Chr2:68482932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:68482945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B36,B61,C27
`Chr2:68483578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,D6
`Chr2:68483582`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B14,C26,C63,C76
`Chr2:68483630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:68484282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B27,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791480.1

927 aa

464

927

Clp_N

AAA_5

AAA

AAA_lid_9

UVR

Sigma54_activat

AAA_2

AAA_5

AAA

ClpB_D2-small

PF02861 Clp_N 99-221 aa PF02861 Clp_N 175-239 aa PF07728 AAA_5 302-380 aa PF00004 AAA 302-414 aa PF17871 AAA_lid_9 441-541 aa PF02151 UVR 514-549 aa PF00158 Sigma54_activat 637-744 aa PF07724 AAA_2 639-813 aa PF07728 AAA_5 644-765 aa PF00004 AAA 645-764 aa PF10431 ClpB_D2-small 820-900 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791480.1`	Pfam	`PF02861`	Clp_N	Family	99	221	3.1e-49	167.1	Clp repeat (R) N-terminal domain
`XP_057791480.1`	Pfam	`PF02861`	Clp_N	Family	175	239	3.1e-49	167.1	Clp repeat (R) N-terminal domain
`XP_057791480.1`	Pfam	`PF07728`	AAA_5	Domain	302	380	9.7e-20	71.7	AAA domain (dynein-related subfamily)
`XP_057791480.1`	Pfam	`PF00004`	AAA	Domain	302	414	1.4e-24	87.8	ATPase family associated with various cellular activities (AAA)
`XP_057791480.1`	Pfam	`PF17871`	AAA_lid_9	Domain	441	541	5e-35	120.3	AAA lid domain
`XP_057791480.1`	Pfam	`PF02151`	UVR	Family	514	549	2e-09	37.6	UvrB/uvrC motif
`XP_057791480.1`	Pfam	`PF00158`	Sigma54_activat	Domain	637	744	4.6e-09	36.9	Sigma-54 interaction domain
`XP_057791480.1`	Pfam	`PF07724`	AAA_2	Domain	639	813	7.6e-73	244.7	AAA domain (Cdc48 subfamily)
`XP_057791480.1`	Pfam	`PF07728`	AAA_5	Domain	644	765	9.7e-20	71.7	AAA domain (dynein-related subfamily)
`XP_057791480.1`	Pfam	`PF00004`	AAA	Domain	645	764	1.4e-24	87.8	ATPase family associated with various cellular activities (AAA)
`XP_057791480.1`	Pfam	`PF10431`	ClpB_D2-small	Domain	820	900	5.3e-25	88.0	C-terminal, D2-small domain, of ClpB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935497.1
GAAGTTTCTTTAGAGCCCAACCCCGAATAATTGAGAAGTAGAATTAGAGTCATGCTCTCCTACTGTGTCTTTGATTTTTTTATACGTAGAAGAAGTTGATTTCAAAAACCAGAAACGCCGCCCTCTTCTTCTCCTTTTCTCTATTCCTCCGCCGGCTGAACCCTAGCACTTTCCGAGTTGCAGCGGCAGCGTATCTGTTGTAAGCAGAATCAGCAATGGCGCATGCTCTACTTCAACCAACCAGATTGCCTTCTTCTTCA...

CDS

1 records

下载 CDS FASTA

LOC131008570
ATGGCGCATGCTCTACTTCAACCAACCAGATTGCCTTCTTCTTCAGCCTGTTTTACGAATAGTGGGCAGTTCAATGGGTCTAATAAGAGTAAAAGATTGTCGGCGACTATGTTGTGTAGCTCACGATCCGCTTCCATGAGACTGAGCAGTTTCTCAGGATTGCGGCGAGCTAATTCCATTGACACTATTCTGCACCAAAGCCTGCAGCACACCTTCCTATCAAAAGTGGCAGCTGCAACCACCGTCAATAGACGAGGGAG...

Protein

1 records

下载 Protein FASTA

XP_057791480.1
MAHALLQPTRLPSSSACFTNSGQFNGSNKSKRLSATMLCSSRSASMRLSSFSGLRRANSIDTILHQSLQHTFLSKVAAATTVNRRGRNLRMTPRAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGLAAKTLKAIGIHLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARHFGHNYIAPEHLLLGLLREGEGVAARVLESLGADLSNIRTQVIRMIGENQDPATVGGGDRSSGGNMPTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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