当前解析结果
SmilChr02G004603| 统一新 Gene ID | SmilChr02G004603 |
|---|---|
| 名称 | SmilChr02G004603 |
| 描述 | ERAD-associated E3 ubiquitin-protein ligase component HRD3A |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 68540602 - 68546320 / - |
| NCBI Gene ID | LOC131008573 |
|---|---|
| GeneID | 131008573 |
| locus_tag | - |
| NCBI Name | LOC131008573 |
| 原始查询 | LOC131008573 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ERAD-associated E3 ubiquitin-protein ligase component HRD3A |
| 产物 | ERAD-associated E3 ubiquitin-protein ligase component HRD3A |
| Arabidopsis | AT1G18260 (EBS5)HCP-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838406] identity=75.6; qcov=0.954; evalue=0; confidence=high |
| Rice | Os03g0259300 (OsHrd3)- identity=68.5; qcov=0.968; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0030433 (GO:0030433) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08238 (Sel1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008573 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057791483.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057791483.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791483.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791483.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791483.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:68540907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:68540949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B28,C61,C85 |
Chr2:68541086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B28,C61,C85 |
Chr2:68541092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:68541872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr2:68541959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:68541989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B33,C8 |
Chr2:68542270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B104,C20 |
Chr2:68542495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr2:68542533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr2:68543416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B104,C20 |
Chr2:68545784 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791483.1PF08238
Sel1 134-167 aa
PF08238
Sel1 252-285 aa
PF08238
Sel1 288-320 aa
PF08238
Sel1 325-357 aa
PF08238
Sel1 364-394 aa
PF08238
Sel1 400-430 aa
PF08238
Sel1 444-462 aa
PF08238
Sel1 514-536 aa
PF08238
Sel1 548-579 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 134 | 167 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 252 | 285 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 288 | 320 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 325 | 357 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 364 | 394 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 400 | 430 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 444 | 462 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 514 | 536 | 8.6e-49 | 162.9 | Sel1 repeat |
XP_057791483.1 |
Pfam | PF08238 |
Sel1 | Repeat | 548 | 579 | 8.6e-49 | 162.9 | Sel1 repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。