Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004636

染色体: Chr02 坐标: 68821560-68828980 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004636
名称SmilChr02G004636
描述kinesin-like protein KIN-8B
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向68821560 - 68828980 / +

ID 对照

NCBI Gene IDLOC131008629
GeneID131008629
locus_tag-
NCBI NameLOC131008629
原始查询LOC131008629

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein KIN-8B
产物kinesin-like protein KIN-8B
ArabidopsisAT3G49650 (AT3G49650)
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824127]
identity=68.2; qcov=0.884; evalue=0; confidence=high
RiceOs03g0773600 (KIN8B)
-
identity=69.4; qcov=0.816; evalue=0; confidence=high
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGGsmil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
PfamPF00225 (Kinesin); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:131008629

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057791552.1
2 Spindle Spindle 1.00000 XP_057791552.1
3 Spindle pole Spindle pole 0.80000 XP_057791552.1
4 Chromosome 染色体 0.60000 XP_057791552.1
5 Midbody Midbody 0.20000 XP_057791552.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:68822595 G A EMS_canonical_SNV CDS_variant 4 B11,B3,B69,C31
Chr2:68822627 G A EMS_canonical_SNV CDS_variant 1 B91
Chr2:68825237 CT C 1bp_deletion frameshift_variant 3 B108,B50,C23
Chr2:68825237 CT C 1bp_deletion CDS_variant 3 B108,B50,C23
Chr2:68826819 G A EMS_canonical_SNV CDS_variant 4 A8,B124,B23,C25
Chr2:68826944 C T EMS_canonical_SNV CDS_variant 2 B56,B96
Chr2:68827267 G A EMS_canonical_SNV CDS_variant 3 A4,D3,D6
Chr2:68827447 C T EMS_canonical_SNV CDS_variant 2 B15,B32
Chr2:68827767 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:68828031 C T EMS_canonical_SNV CDS_variant 1 C16
Chr2:68828231 G A EMS_canonical_SNV CDS_variant 2 C44,D11
Chr2:68828238 G A EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057791552.1
809 aa
N
1
404
809
Kinesin
Microtub_bd
C
PF00225 Kinesin 19-347 aa PF16796 Microtub_bd 53-162 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791552.1 Pfam PF00225 Kinesin Domain 19 347 3.6e-111 372.0 Kinesin motor domain
XP_057791552.1 Pfam PF16796 Microtub_bd Domain 53 162 5.7e-20 72.5 Microtubule binding

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057935569.1
ATACCAAATTCCCTCCTCCACCACAGTTACAAAAATATGAGAGCAGTGCAAACAATCAGCTTCTCTCTTCCACCAAAGACAAAAATAAAATTACATATAGAAAGAAATACTCCATATAGTATTAATAAATATAGCTCAACGTCTTTCAGACAAGAAACTTCTCTGATTCATTTTTCATATTTACTCCAATTCAATGCAATGCCCTTGCGGATCTTCTCCACTCCCTCTATCCAAATTCAAAGTATTCATTGCTTGTAATT...

CDS

1 records

下载 CDS FASTA
LOC131008629
ATGCCGAGCATTACAGCTACGACGAAGAAAATCACCACTCTCACTGTGGCTGTCAAATGCCGGCCGCTGACTGCCAAAGAGCTTGGACGTGATATAGTAAGAGTGCATAATGACAAGGAAGTTCTTGTTTTAGACCCGGACCTTTCAAAGGAGTACCTAGATCGCATACAAAATCGAACAAAGGAGCGGAGATACACATTTGATTATGCATATGGCACTAACTCTACCAATTTGGATGTATACAAGAGAAGTATACGTTG...

Protein

1 records

下载 Protein FASTA
XP_057791552.1
MPSITATTKKITTLTVAVKCRPLTAKELGRDIVRVHNDKEVLVLDPDLSKEYLDRIQNRTKERRYTFDYAYGTNSTNLDVYKRSIRCTIAGVVNGLNATVFAYGSTGSGKTYTMVGTRDDPGLMVLSLNTIFNLMEKDNSSDDFEVTCSYLEVYNEVIYDLLEKSSGHLELREDPEQGIVVAGLRSIKVNSADRILELLNLGNSRRKTESTEVNATSSRSHAVLEITVTRKQQKKYPNQVIRGKLALVDLAGSERASETN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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