Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004659`

染色体: Chr02 坐标: 68990617-68998997 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004659`
名称	SmilChr02G004659
描述	integrin-linked protein kinase 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68990617 - 68998997 / `-`

ID 对照

NCBI Gene ID	`LOC131008651`
GeneID	`131008651`
locus_tag	`-`
NCBI Name	`LOC131008651`
原始查询	`LOC131008651`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	integrin-linked protein kinase 1-like
产物	integrin-linked protein kinase 1-like
Arabidopsis	`AT4G18950` (AT4G18950) Integrin-linked protein kinase family [Source:NCBI gene (formerly Entrezgene);Acc:827630] identity=34.2; qcov=0.86; evalue=1.8e-49; confidence=low
Rice	`Os01g0748600` (P0481E12.28-1) - identity=31.8; qcov=0.942; evalue=9.36e-44; confidence=low
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00023 (Ank); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131008651

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057791589.1`
2	Cytosol	细胞质基质	1.00000	`XP_057791589.1`
3	Nucleus	细胞核	0.80000	`XP_057791590.1`
4	Chromosome	染色体	0.00000	`XP_057791589.1`
5	Centromere	着丝粒	0.00000	`XP_057791589.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68992010`	`C`	`CA`	1bp_insertion	frameshift_variant	62	A16,A18,A19,A20,A24,A4,A9,B10,B105,B11,B13,B134,B135,B138,B139,B14,B15,B17,B30,B34,B35,B38,B39,B42,B43,B51,B56,B58,B61,B70,B72,B76,B78,B85,B90,B92,B95,B96,C12,C13,C26,C28,C30,C34,C36,C37,C40,C41,C47,C59,C63,C7,C70,C76,C8,C80,C81,C82,D1,D2,D7,D9
`Chr2:68992037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:68992048`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B32
`Chr2:68992048`	`GC`	`G`	1bp_deletion	CDS_variant	1	B32
`Chr2:68992055`	`T`	`TG`	1bp_insertion	frameshift_variant	5	B37,B66,C39,C54,C78
`Chr2:68992055`	`T`	`TG`	1bp_insertion	CDS_variant	5	B37,B66,C39,C54,C78
`Chr2:68992094`	`T`	`TG`	1bp_insertion	frameshift_variant	57	A16,A18,A19,A20,A24,A4,A9,B10,B105,B11,B13,B134,B135,B139,B14,B15,B17,B30,B34,B35,B38,B39,B43,B51,B56,B58,B61,B70,B72,B78,B85,B90,B92,B96,C12,C13,C26,C28,C30,C34,C36,C40,C41,C47,C59,C63,C7,C70,C76,C8,C80,C81,C82,D1,D2,D7,D9
`Chr2:68992095`	`G`	`A`	EMS_canonical_SNV	stop_gained	6	B119,B37,B66,C39,C54,C78
`Chr2:68992096`	`A`	`AAT`	2bp_insertion	frameshift_variant	54	A16,A18,A19,A20,A24,A4,A9,B10,B11,B13,B135,B139,B14,B15,B17,B30,B34,B35,B38,B39,B43,B51,B56,B58,B61,B70,B72,B78,B85,B90,B92,B96,C12,C13,C26,C28,C30,C34,C36,C40,C41,C47,C59,C63,C7,C70,C76,C8,C80,C81,C82,D1,D2,D7
`Chr2:68992125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:68992143`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B33,B40,B61
`Chr2:68992175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791589.1

428 aa

214

428

Ank_2

Ank_5

Ank_4

Ank_3

Ank

PK_Tyr_Ser-Thr

Pkinase

PF12796 Ank_2 25-93 aa PF13857 Ank_5 27-78 aa PF13637 Ank_4 31-61 aa PF13606 Ank_3 40-68 aa PF00023 Ank 40-72 aa PF07714 PK_Tyr_Ser-Thr 130-273 aa PF00069 Pkinase 132-332 aa

XP_057791590.1

407 aa

204

407

Ank_2

Ank_5

Ank_4

Ank_3

Ank

PK_Tyr_Ser-Thr

PF12796 Ank_2 24-93 aa PF13857 Ank_5 27-78 aa PF13637 Ank_4 31-61 aa PF13606 Ank_3 40-68 aa PF00023 Ank 40-72 aa PF07714 PK_Tyr_Ser-Thr 130-232 aa

XP_057791591.1

385 aa

192

385

Ank_2

Ank_5

Ank_4

Ank_3

Ank

PK_Tyr_Ser-Thr

Pkinase

PF12796 Ank_2 24-93 aa PF13857 Ank_5 27-78 aa PF13637 Ank_4 31-61 aa PF13606 Ank_3 40-68 aa PF00023 Ank 40-72 aa PF07714 PK_Tyr_Ser-Thr 130-358 aa PF00069 Pkinase 132-356 aa

XP_057791592.1

364 aa

182

364

Ank_2

Ank_5

Ank_4

Ank_3

Ank

PK_Tyr_Ser-Thr

PF12796 Ank_2 24-93 aa PF13857 Ank_5 27-78 aa PF13637 Ank_4 31-61 aa PF13606 Ank_3 40-68 aa PF00023 Ank 40-72 aa PF07714 PK_Tyr_Ser-Thr 130-232 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791589.1`	Pfam	`PF12796`	Ank_2	Repeat	25	93	5.3e-12	46.9	Ankyrin repeats (3 copies)
`XP_057791589.1`	Pfam	`PF13857`	Ank_5	Repeat	27	78	6.6e-11	43.0	Ankyrin repeats (many copies)
`XP_057791589.1`	Pfam	`PF13637`	Ank_4	Repeat	31	61	2.9e-07	31.3	Ankyrin repeats (many copies)
`XP_057791589.1`	Pfam	`PF13606`	Ank_3	Repeat	40	68	7.1e-06	26.6	Ankyrin repeat
`XP_057791589.1`	Pfam	`PF00023`	Ank	Repeat	40	72	5.4e-11	42.8	Ankyrin repeat
`XP_057791589.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	130	273	4.9e-23	82.5	Protein tyrosine and serine/threonine kinase
`XP_057791589.1`	Pfam	`PF00069`	Pkinase	Domain	132	332	6.9e-19	69.0	Protein kinase domain
`XP_057791590.1`	Pfam	`PF12796`	Ank_2	Repeat	24	93	6e-12	46.7	Ankyrin repeats (3 copies)
`XP_057791590.1`	Pfam	`PF13857`	Ank_5	Repeat	27	78	6.8e-11	43.0	Ankyrin repeats (many copies)
`XP_057791590.1`	Pfam	`PF13637`	Ank_4	Repeat	31	61	3.2e-07	31.2	Ankyrin repeats (many copies)
`XP_057791590.1`	Pfam	`PF13606`	Ank_3	Repeat	40	68	7.8e-06	26.5	Ankyrin repeat
`XP_057791590.1`	Pfam	`PF00023`	Ank	Repeat	40	72	5.3e-11	42.9	Ankyrin repeat
`XP_057791590.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	130	232	6.4e-11	42.8	Protein tyrosine and serine/threonine kinase
`XP_057791591.1`	Pfam	`PF12796`	Ank_2	Repeat	24	93	3.7e-12	47.3	Ankyrin repeats (3 copies)
`XP_057791591.1`	Pfam	`PF13857`	Ank_5	Repeat	27	78	4.9e-11	43.4	Ankyrin repeats (many copies)
`XP_057791591.1`	Pfam	`PF13637`	Ank_4	Repeat	31	61	2e-07	31.8	Ankyrin repeats (many copies)
`XP_057791591.1`	Pfam	`PF13606`	Ank_3	Repeat	40	68	4.4e-06	27.3	Ankyrin repeat
`XP_057791591.1`	Pfam	`PF00023`	Ank	Repeat	40	72	1.3e-10	41.6	Ankyrin repeat
`XP_057791591.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	130	358	6.1e-26	92.0	Protein tyrosine and serine/threonine kinase
`XP_057791591.1`	Pfam	`PF00069`	Pkinase	Domain	132	356	2.3e-19	70.5	Protein kinase domain
`XP_057791592.1`	Pfam	`PF12796`	Ank_2	Repeat	24	93	4.3e-12	47.2	Ankyrin repeats (3 copies)
`XP_057791592.1`	Pfam	`PF13857`	Ank_5	Repeat	27	78	5e-11	43.4	Ankyrin repeats (many copies)
`XP_057791592.1`	Pfam	`PF13637`	Ank_4	Repeat	31	61	2.2e-07	31.7	Ankyrin repeats (many copies)
`XP_057791592.1`	Pfam	`PF13606`	Ank_3	Repeat	40	68	4.7e-06	27.2	Ankyrin repeat
`XP_057791592.1`	Pfam	`PF00023`	Ank	Repeat	40	72	2.4e-10	40.8	Ankyrin repeat
`XP_057791592.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	130	232	7.9e-14	52.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057935608.1
GAACCCGAACAGCTTCGTCTTCGACTTAACCGCCATTGCTGGCCTCTTCCAACCGACAATCCATCTCTCTCTCTCTCTCGCTCTCAATACATGGAGAAAATAAATAAATCGAGAAGTTGTAGATACTACAATTTTGTGATCAGGGATTATAACATTATCTCTTTCGCTCATTTGAATTTAGTAGACTGCGTTCAGTTTGGTACTGATCCAGAGAGCTAAATGTCGGGTGTCGACATGCAAATGATAGGAAATTTCTTGAG...

XM_057935609.1
TACTACAATTTTGTGATCAGGGATTATAACATTATCTCTTTCGCTCATTTGAATTTAGTAGACTGCGTTCAGTTTGGTACTGATCCAGAGAGCTAAATGTCGGGTGTCGACATGCAAATGATAGGAAATTTCTTGAGCTTTGCTTCAAGAGGAGATAGGGTTGGATTGAATGATATGCTGAGGCAGGGAATGCCACCCAACGTGCAGGACTATGATAACCGAACTGCGCTTCATCTCGCCGCCAGCGAAGGTCATGCCTC...

CDS

4 records

下载 CDS FASTA

LOC131008651
ATGTCGGGTGTCGACATGCAAATGATAGGAAATTTCTTGAGCTTTGCTTCAAGAGGAGATAGGGTTGGATTGAATGATATGCTGAGGCAGGGAATGCCACCCAACGTGCAGGACTATGATAACCGAACTGCGCTTCATCTCGCCGCCAGCGAAGGTCATGCCTCCATCGTCGAGCTTCTTTTGGCCTACAATGCCGACGTCAATCTCCGAGATCGCTGGCAAAGAACTCCATTAGCAGATGCAAAGCTGTATCAGCATCG...

Protein

4 records

下载 Protein FASTA

XP_057791589.1
MSGVDMQMIGNFLSFASRGDRVGLNDMLRQGMPPNVQDYDNRTALHLAASEGHASIVELLLAYNADVNLRDRWQRTPLADAKLYQHRDICRILELNGGRDLMEDQEMYVCHEDDPQENIDISELNLQNSSIIKQGLFGESEKVKWRGTCVVKTVISRHIQHPVKMVLTAKDNTLLGELRHPNILEFLGSIVHGEEMILITEHLPKGNLDDLLAKKVKLDPATCLRYALDIARGMNYLHQHKPKPIVHNHLDTRNLLIDEG...

XP_057791590.1
MSGVDMQMIGNFLSFASRGDRVGLNDMLRQGMPPNVQDYDNRTALHLAASEGHASIVELLLAYNADVNLRDRWQRTPLADAKLYQHRDICRILELNGGRDLMEDQEMYVCHEDDPQENIDISELNLQNSSIIKQGLFGESEKVKWRGTCVVKTVISRHIQHPVKMVLTAKDNTLLGELRHPNILEFLGSIVHGEEMILITEHLPKGNLDDLLAKKVKLDPATCLRYALDIARNLLIDEGDQVKIGEYWVQMLYERIHPIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器