当前解析结果
SmilChr01G002650| 统一新 Gene ID | SmilChr01G002650 |
|---|---|
| 名称 | SmilChr01G002650 |
| 描述 | uncharacterized SmilChr01G002650 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 44825256 - 44827403 / - |
| NCBI Gene ID | LOC131008657 |
|---|---|
| GeneID | 131008657 |
| locus_tag | - |
| NCBI Name | LOC131008657 |
| 原始查询 | LOC131008657 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=45.5; qcov=0.965; evalue=5.38e-158; confidence=high |
| Rice | Os02g0301400- identity=38.5; qcov=0.611; evalue=1.49e-80; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008657 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791603.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057791603.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791603.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791603.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791603.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:44825270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,B48,B73,C75 |
Chr1:44825294 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr1:44825294 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B35 |
Chr1:44825321 |
G |
A |
EMS_canonical_SNV | stop_gained | 24 | A11,A6,B103,B106,B108,B124,B22,B24,B25,B45,B78,C15,C16,C4,C42,C47,C5,C61,C62,C69,C8,C80,D1,D5 |
Chr1:44825324 |
GA |
G |
1bp_deletion | frameshift_variant | 6 | B103,B124,C15,C42,C80,D5 |
Chr1:44825343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr1:44825356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B20,B27 |
Chr1:44825372 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A14,A2,A3,B124,B52,B80,C30,C53,C84,D5 |
Chr1:44825390 |
G |
A |
EMS_canonical_SNV | stop_gained | 22 | A18,A2,B10,B109,B123,B130,B55,B68,B81,B84,B88,C13,C16,C30,C40,C64,C66,C77,D10,D2,D7,D8 |
Chr1:44825433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B99 |
Chr1:44825437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B121 |
Chr1:44825440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B79,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791603.1PF14291
DUF4371 19-91 aa
PF14291
DUF4371 90-217 aa
PF27073
FAM200-ZBED5_RNase-like 132-223 aa
PF05699
Dimer_Tnp_hAT 505-551 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791603.1 |
Pfam | PF14291 |
DUF4371 | Domain | 19 | 91 | 2.9e-70 | 237.2 | ZMYM1/FAM200, RNase-like domain |
XP_057791603.1 |
Pfam | PF14291 |
DUF4371 | Domain | 90 | 217 | 2.9e-70 | 237.2 | ZMYM1/FAM200, RNase-like domain |
XP_057791603.1 |
Pfam | PF27073 |
FAM200-ZBED5_RNase-like | Domain | 132 | 223 | 1.6e-09 | 38.3 | FAM200/ZBED5 RNase-like |
XP_057791603.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 505 | 551 | 2e-05 | 25.0 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。