Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004770`

染色体: Chr02 坐标: 69876434-69879104 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004770`
名称	SmilChr02G004770
描述	xyloglucan glycosyltransferase 4
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69876434 - 69879104 / `+`

ID 对照

NCBI Gene ID	`LOC131008677`
GeneID	`131008677`
locus_tag	`-`
NCBI Name	`LOC131008677`
原始查询	`LOC131008677`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	xyloglucan glycosyltransferase 4
产物	xyloglucan glycosyltransferase 4
Arabidopsis	`AT3G28180` (CSLC04) Cellulose-synthase-like C4 [Source:NCBI gene (formerly Entrezgene);Acc:822444] identity=70.5; qcov=1.05; evalue=0; confidence=high
Rice	`Os03g0770800` (OsCslC9) - identity=69.7; qcov=0.888; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF00535 (Glycos_transf_2); PF13506 (Glyco_transf_21); PF13632 (Glyco_trans_2_3); PF13641 (Glyco_tranf_2_3)
InterPro	-
eggNOG	-
NR	GeneID:131008677

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057791636.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057791636.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057791636.1`
4	Nucleus	细胞核	0.00000	`XP_057791636.1`
5	Chromosome	染色体	0.00000	`XP_057791636.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69876802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,D11
`Chr2:69876919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:69876961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B6,C63,D2,D8
`Chr2:69877068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,B77,C23
`Chr2:69877152`	`G`	`GC`	1bp_insertion	frameshift_variant	121	A10,A15,A22,A25,A3,A6,A9,B10,B100,B104,B107,B109,B112,B117,B118,B119,B120,B122,B127,B128,B129,B13,B130,B131,B135,B15,B16,B19,B2,B20,B22,B24,B25,B26,B27,B28,B30,B37,B39,B4,B40,B43,B45,B48,B50,B51,B52,B53,B54,B55,B56,B57,B59,B60,B63,B65,B68,B69,B7,B72,B73,B74,B75,B77,B79,B82,B83,B84,B88,B91,B92,B94,B95,C10,C13,C14,C17,C18,C19,C2,C20,C23,C26,C29,C32,C35,C37,C39,C40,C46,C47,C48,C49,C5,C53,C58,C59,C6,C61,C64,C66,C67,C68,C69,C70,C77,C78,C8,C80,C82,C83,C84,C87,D1,D10,D11,D2,D3,D6,D8,D9
`Chr2:69877155`	`CG`	`C`	1bp_deletion	frameshift_variant	121	A10,A15,A22,A25,A3,A6,A9,B10,B100,B104,B107,B109,B112,B117,B118,B119,B120,B122,B127,B128,B129,B13,B130,B131,B135,B15,B16,B19,B2,B20,B22,B24,B25,B26,B27,B28,B30,B37,B39,B4,B40,B43,B45,B48,B50,B51,B52,B53,B54,B55,B56,B57,B59,B60,B63,B65,B68,B69,B7,B72,B73,B74,B75,B77,B79,B82,B83,B84,B88,B91,B92,B94,B95,C10,C13,C14,C17,C18,C19,C2,C20,C23,C26,C29,C32,C35,C37,C39,C40,C46,C47,C48,C49,C5,C53,C58,C59,C6,C61,C64,C66,C67,C68,C69,C70,C77,C78,C8,C80,C82,C83,C84,C87,D1,D10,D11,D2,D3,D6,D8,D9
`Chr2:69877159`	`AAC`	`A`	2bp_deletion	frameshift_variant	122	A10,A15,A22,A25,A3,A6,A9,B10,B100,B104,B107,B109,B112,B117,B118,B119,B120,B122,B127,B128,B129,B13,B130,B131,B135,B15,B16,B19,B2,B20,B22,B24,B25,B26,B27,B28,B30,B37,B39,B4,B40,B43,B45,B48,B50,B51,B52,B53,B54,B55,B56,B57,B59,B60,B63,B65,B68,B69,B7,B72,B73,B74,B75,B77,B79,B82,B83,B84,B88,B91,B92,B94,B95,C10,C13,C14,C17,C18,C19,C2,C20,C23,C26,C29,C32,C35,C37,C39,C40,C46,C47,C48,C49,C5,C53,C56,C58,C59,C6,C61,C64,C66,C67,C68,C69,C70,C77,C78,C8,C80,C82,C83,C84,C87,D1,D10,D11,D2,D3,D6,D8,D9
`Chr2:69877162`	`G`	`GTT`	2bp_insertion	frameshift_variant	121	A10,A15,A22,A25,A3,A6,A9,B10,B100,B104,B107,B109,B112,B117,B118,B119,B120,B122,B128,B129,B13,B130,B131,B135,B15,B16,B19,B2,B20,B22,B24,B25,B26,B27,B28,B30,B37,B39,B4,B40,B43,B45,B48,B50,B51,B52,B53,B54,B55,B56,B57,B59,B60,B63,B65,B68,B69,B7,B72,B73,B74,B75,B77,B79,B82,B83,B84,B88,B91,B92,B94,B95,C10,C13,C14,C17,C18,C19,C2,C20,C23,C26,C29,C32,C35,C37,C39,C40,C46,C47,C48,C49,C5,C53,C56,C58,C59,C6,C61,C64,C66,C67,C68,C69,C70,C77,C78,C8,C80,C82,C83,C84,C87,D1,D10,D11,D2,D3,D6,D8,D9
`Chr2:69877276`	`G`	`GA`	1bp_insertion	frameshift_variant	12	A5,B109,B125,B30,B40,B82,B90,B92,C1,C29,C8,C87
`Chr2:69877277`	`A`	`AAT`	2bp_insertion	frameshift_variant	48	A15,A25,B100,B101,B104,B111,B127,B13,B15,B16,B21,B22,B24,B30,B31,B4,B40,B45,B49,B54,B63,B68,B72,B73,B84,B87,B92,B93,B94,B98,C17,C18,C2,C35,C39,C4,C43,C44,C47,C51,C53,C6,C78,C83,C84,D11,D6,D8
`Chr2:69877280`	`G`	`GT`	1bp_insertion	frameshift_variant	49	A15,A25,B100,B101,B104,B111,B127,B13,B15,B16,B21,B22,B24,B30,B31,B4,B40,B45,B49,B54,B63,B68,B72,B73,B84,B87,B92,B94,B98,C17,C18,C2,C35,C39,C4,C43,C44,C47,C51,C53,C56,C6,C77,C78,C83,C84,D11,D6,D8
`Chr2:69877304`	`GAT`	`G`	2bp_deletion	frameshift_variant	48	A15,A25,B100,B101,B104,B111,B127,B13,B15,B16,B22,B24,B30,B31,B4,B40,B45,B49,B54,B63,B68,B72,B73,B84,B87,B92,B94,B98,C17,C18,C2,C35,C39,C4,C43,C44,C47,C51,C53,C56,C6,C77,C78,C83,C84,D11,D6,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791636.1

659 aa

330

659

Glyco_transf_21

Glyco_tranf_2_3

Glycos_transf_2

Glyco_trans_2_3

PF13506 Glyco_transf_21 183-479 aa PF13641 Glyco_tranf_2_3 198-431 aa PF00535 Glycos_transf_2 203-349 aa PF13632 Glyco_trans_2_3 292-486 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791636.1`	Pfam	`PF13506`	Glyco_transf_21	Domain	183	479	1.2e-11	44.9	Glycosyl transferase family 21
`XP_057791636.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	198	431	3e-14	54.0	Glycosyltransferase like family 2
`XP_057791636.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	203	349	1.2e-06	29.3	Glycosyl transferase family 2
`XP_057791636.1`	Pfam	`PF13632`	Glyco_trans_2_3	Domain	292	486	8.1e-21	75.5	Glycosyl transferase family group 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935653.1
TTAATCTGTGACCGACACTATATGAGTGGTGCGCTGTCTTACCACCTAGGAAATACAATTGGTTGTTAGAAAACGATAAAAATGGTTAAAACAACAGAATTTTTTGATTGAACAATCCTCTCTTCTATATTCAAACTTTTCATTCAACGTCATATATCACTCTTGATGTCAAATGTTTGTGTCTGCGTGTGGAAACTCATAGCTCAGTTCCAACAGATTTCAGTATATGTACATAAAACTAGAATATAATGGGTGCAGAT...

CDS

1 records

下载 CDS FASTA

LOC131008677
ATGGCAATGGCAGCAAGTAGTGTGGTAGTCACACTTGATCGCCCCGACAACATCTCTCTGATAAACATGAACGACATGAATCTTGAATCAACAAGATTCCATGAAAAACAGAAAGCCGCAAGCCCCAAGCAGTTCAGTTGGGTGCTTCTGCTCAAACTGCAGAGGATCCTAGCTTGCATTCCACGGGCGGCAACGAGCTCGTGGGCAGTTCTCGGGTCGATCAAGAGGCGCGTGGCCTCCTCGGATCCGGAGGATCCGAG...

Protein

1 records

下载 Protein FASTA

XP_057791636.1
MAMAASSVVVTLDRPDNISLINMNDMNLESTRFHEKQKAASPKQFSWVLLLKLQRILACIPRAATSSWAVLGSIKRRVASSDPEDPRYRGRLYMFIKAFLALSVMALVVEIFAYFKDWDLSIPHSWEVDSLVQWCYMSWMSSRTDYVAPLVVALSRFCLVLFVIQSLDRLLQCLGCFWIKFRKVRQSDVEDDGASFHPMVLVQIPMCNEKEVYEQSIGAACQLDWPKDRFLVQVLDDSDDELLQHLIRDEVVSWREKGVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器