Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004683`

染色体: Chr02 坐标: 69142161-69146624 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004683`
名称	SmilChr02G004683
描述	uncharacterized SmilChr02G004683
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69142161 - 69146624 / `+`

ID 对照

NCBI Gene ID	`LOC131008680`
GeneID	`131008680`
locus_tag	`-`
NCBI Name	`LOC131008680`
原始查询	`LOC131008680`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0152500; species=rice; confidence=low
产物	hit=Os01g0152500; species=rice; confidence=low
Arabidopsis	`AT5G37930` (AT5G37930) Protein with RING/U-box and TRAF-like domain [Source:NCBI gene (formerly Entrezgene);Acc:833772] identity=27.8; qcov=0.307; evalue=4.43e-19; confidence=low
Rice	`Os01g0152500` - identity=25.8; qcov=0.414; evalue=7.12e-23; confidence=low
GO	GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00505 (HMG_box); PF09011 (HMG_box_2); PF10536 (PMD); PF21361 (Sina_ZnF); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131008680

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791643.1`
2	Chromosome	染色体	0.00000	`XP_057791643.1`
3	Centromere	着丝粒	0.00000	`XP_057791643.1`
4	Chromatin	染色质	0.00000	`XP_057791643.1`
5	Telomere	端粒	0.00000	`XP_057791643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69143200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:69143229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C30,C6,D3
`Chr2:69143438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,D6
`Chr2:69143697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B78,C43
`Chr2:69144233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,D11
`Chr2:69144250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:69144383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B3,C62
`Chr2:69144389`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,C27
`Chr2:69144731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B78,C43
`Chr2:69146048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:69146191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791643.1

620 aa

310

620

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 36-101 aa PF09011 HMG_box_2 42-96 aa PF29561 DUF8566 115-311 aa PF10536 PMD 182-342 aa PF21361 Sina_ZnF 435-495 aa

XP_057791644.1

620 aa

310

620

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 36-101 aa PF09011 HMG_box_2 42-96 aa PF29561 DUF8566 115-311 aa PF10536 PMD 182-342 aa PF21361 Sina_ZnF 435-495 aa

XP_057791645.1

616 aa

308

616

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 36-101 aa PF09011 HMG_box_2 42-96 aa PF29561 DUF8566 115-311 aa PF10536 PMD 182-342 aa PF21361 Sina_ZnF 431-491 aa

XP_057791646.1

616 aa

308

616

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 36-101 aa PF09011 HMG_box_2 42-96 aa PF29561 DUF8566 115-311 aa PF10536 PMD 182-342 aa PF21361 Sina_ZnF 431-491 aa

XP_057791647.1

613 aa

306

613

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 29-94 aa PF09011 HMG_box_2 35-89 aa PF29561 DUF8566 108-304 aa PF10536 PMD 175-335 aa PF21361 Sina_ZnF 428-488 aa

XP_057791648.1

613 aa

306

613

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 29-94 aa PF09011 HMG_box_2 35-89 aa PF29561 DUF8566 108-304 aa PF10536 PMD 175-335 aa PF21361 Sina_ZnF 428-488 aa

XP_057791649.1

609 aa

304

609

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 29-94 aa PF09011 HMG_box_2 35-89 aa PF29561 DUF8566 108-304 aa PF10536 PMD 175-335 aa PF21361 Sina_ZnF 424-484 aa

XP_057791650.1

609 aa

304

609

HMG_box

HMG_box_2

DUF8566

PMD

Sina_ZnF

PF00505 HMG_box 29-94 aa PF09011 HMG_box_2 35-89 aa PF29561 DUF8566 108-304 aa PF10536 PMD 175-335 aa PF21361 Sina_ZnF 424-484 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791643.1`	Pfam	`PF00505`	HMG_box	Domain	36	101	3.5e-09	37.7	HMG (high mobility group) box
`XP_057791643.1`	Pfam	`PF09011`	HMG_box_2	Domain	42	96	2.6e-05	25.5	HMG-box domain
`XP_057791643.1`	Pfam	`PF29561`	DUF8566	Domain	115	311	3.6e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791643.1`	Pfam	`PF10536`	PMD	Domain	182	342	5.8e-11	42.9	Plant mobile domain
`XP_057791643.1`	Pfam	`PF21361`	Sina_ZnF	Domain	435	495	4.2e-13	50.2	Sina, zinc finger
`XP_057791644.1`	Pfam	`PF00505`	HMG_box	Domain	36	101	3.5e-09	37.7	HMG (high mobility group) box
`XP_057791644.1`	Pfam	`PF09011`	HMG_box_2	Domain	42	96	2.6e-05	25.5	HMG-box domain
`XP_057791644.1`	Pfam	`PF29561`	DUF8566	Domain	115	311	3.6e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791644.1`	Pfam	`PF10536`	PMD	Domain	182	342	5.8e-11	42.9	Plant mobile domain
`XP_057791644.1`	Pfam	`PF21361`	Sina_ZnF	Domain	435	495	4.2e-13	50.2	Sina, zinc finger
`XP_057791645.1`	Pfam	`PF00505`	HMG_box	Domain	36	101	3.4e-09	37.7	HMG (high mobility group) box
`XP_057791645.1`	Pfam	`PF09011`	HMG_box_2	Domain	42	96	2.4e-05	25.6	HMG-box domain
`XP_057791645.1`	Pfam	`PF29561`	DUF8566	Domain	115	311	3.6e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791645.1`	Pfam	`PF10536`	PMD	Domain	182	342	5.8e-11	42.9	Plant mobile domain
`XP_057791645.1`	Pfam	`PF21361`	Sina_ZnF	Domain	431	491	4.1e-13	50.2	Sina, zinc finger
`XP_057791646.1`	Pfam	`PF00505`	HMG_box	Domain	36	101	3.4e-09	37.7	HMG (high mobility group) box
`XP_057791646.1`	Pfam	`PF09011`	HMG_box_2	Domain	42	96	2.4e-05	25.6	HMG-box domain
`XP_057791646.1`	Pfam	`PF29561`	DUF8566	Domain	115	311	3.6e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791646.1`	Pfam	`PF10536`	PMD	Domain	182	342	5.8e-11	42.9	Plant mobile domain
`XP_057791646.1`	Pfam	`PF21361`	Sina_ZnF	Domain	431	491	4.1e-13	50.2	Sina, zinc finger
`XP_057791647.1`	Pfam	`PF00505`	HMG_box	Domain	29	94	3.4e-09	37.7	HMG (high mobility group) box
`XP_057791647.1`	Pfam	`PF09011`	HMG_box_2	Domain	35	89	2.4e-05	25.6	HMG-box domain
`XP_057791647.1`	Pfam	`PF29561`	DUF8566	Domain	108	304	3.6e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791647.1`	Pfam	`PF10536`	PMD	Domain	175	335	5.8e-11	42.9	Plant mobile domain
`XP_057791647.1`	Pfam	`PF21361`	Sina_ZnF	Domain	428	488	4.5e-13	50.1	Sina, zinc finger
`XP_057791648.1`	Pfam	`PF00505`	HMG_box	Domain	29	94	3.4e-09	37.7	HMG (high mobility group) box
`XP_057791648.1`	Pfam	`PF09011`	HMG_box_2	Domain	35	89	2.4e-05	25.6	HMG-box domain
`XP_057791648.1`	Pfam	`PF29561`	DUF8566	Domain	108	304	3.6e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791648.1`	Pfam	`PF10536`	PMD	Domain	175	335	5.8e-11	42.9	Plant mobile domain
`XP_057791648.1`	Pfam	`PF21361`	Sina_ZnF	Domain	428	488	4.5e-13	50.1	Sina, zinc finger
`XP_057791649.1`	Pfam	`PF00505`	HMG_box	Domain	29	94	3.4e-09	37.7	HMG (high mobility group) box
`XP_057791649.1`	Pfam	`PF09011`	HMG_box_2	Domain	35	89	2.4e-05	25.7	HMG-box domain
`XP_057791649.1`	Pfam	`PF29561`	DUF8566	Domain	108	304	3.5e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791649.1`	Pfam	`PF10536`	PMD	Domain	175	335	5.7e-11	42.9	Plant mobile domain
`XP_057791649.1`	Pfam	`PF21361`	Sina_ZnF	Domain	424	484	4.4e-13	50.1	Sina, zinc finger
`XP_057791650.1`	Pfam	`PF00505`	HMG_box	Domain	29	94	3.4e-09	37.7	HMG (high mobility group) box
`XP_057791650.1`	Pfam	`PF09011`	HMG_box_2	Domain	35	89	2.4e-05	25.7	HMG-box domain
`XP_057791650.1`	Pfam	`PF29561`	DUF8566	Domain	108	304	3.5e-61	207.2	Domain of unknown function (DUF8566)
`XP_057791650.1`	Pfam	`PF10536`	PMD	Domain	175	335	5.7e-11	42.9	Plant mobile domain
`XP_057791650.1`	Pfam	`PF21361`	Sina_ZnF	Domain	424	484	4.4e-13	50.1	Sina, zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057935665.1
AGAGCCACAAAATAAGAAAAAATTGATGCATTGATAGCAGAAAAGAGAAGAGCTACAACGGGAAAAGAAGAAAAATATAGGAAATAATATAAAGTTAGAAACGAGAAACCGCTGTGCCGACGGAACAGGTGGAGCCTCCGATGCCGCCGCCGTCTCCGATGAGGCCTTGACCCTAGATATGATGGTGCTCATGAGAAATGAACAAGAGCATAGTGAGTCGGAAATCAGTCGGCCAAAAAAGAAGAAGAAGCAAGATGGAA...

XM_057935660.1
AAATTGATGCATTGATAGCAGAAAAGAGAAGAGCTACAACGGGAAAAGAAGAAAAATATAGGAAATAATATAAAGTTAGAAACGAGAAACCGCTGTGCCGACGGAACAGGTGGAGCCTCCGATGCCGCCGCCGTCTCCGATGAGGCCTTGACCCTAGATCTATAAGTTTCACCTGTTATTCACTCAAGAGTGAGTTAAATGATGGTGGAGGTGCTATTCTAAATTATGGTTCCATGTGAAGAAGATATGATGGTGCTCAT...

CDS

8 records

下载 CDS FASTA

LOC131008680
ATGGTTCCATGTGAAGAAGATATGATGGTGCTCATGAGAAATGAACAAGAGCATAGTGAGTCGGAAATCAGTCGGCCAAAAAAGAAGAAGAAGCAAGATGGAACATCTCGTCCAGCATGTTCTTGGGTGCATTTTAGCCGTGAATTTATTAAGGAGTACACTGCATCCCATCCGGAATCCTCGGGCTTGAAAGTGGCCACAAAAGCTGCATCGGATGCCTGGAAATTGATGACACCAGAAGAGAAGTCAAAATACACTAA...

Protein

8 records

下载 Protein FASTA

XP_057791643.1
MVPCEEDMMVLMRNEQEHSESEISRPKKKKKQDGTSRPACSWVHFSREFIKEYTASHPESSGLKVATKAASDAWKLMTPEEKSKYTNRAREVWDKYLSTTPARIPKPRRQTKLVTRCSPGRLLNVLQRLTPDQKAAVKSMGFGSILNLRCRTLRRSLCLWLLEKFNTVRRSLEICSERIPLTPRDVELVMGLASSGKDVVNSGPDELITELRKKYNATNRGISVRLLEERLAVPEAGEDFKRSFLLYVLGTLLCPTARLD...

XP_057791644.1
MVPCEEDMMVLMRNEQEHSESEISRPKKKKKQDGTSRPACSWVHFSREFIKEYTASHPESSGLKVATKAASDAWKLMTPEEKSKYTNRAREVWDKYLSTTPARIPKPRRQTKLVTRCSPGRLLNVLQRLTPDQKAAVKSMGFGSILNLRCRTLRRSLCLWLLEKFNTVRRSLEICSERIPLTPRDVELVMGLASSGKDVVNSGPDELITELRKKYNATNRGISVRLLEERLAVPEAGEDFKRSFLLYVLGTLLCPTARLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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