Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004703`

染色体: Chr02 坐标: 69333845-69336428 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004703`
名称	SmilChr02G004703
描述	glycosyltransferase family 92 protein RCOM_0530710
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69333845 - 69336428 / `-`

ID 对照

NCBI Gene ID	`LOC131008684`
GeneID	`131008684`
locus_tag	`-`
NCBI Name	`LOC131008684`
原始查询	`LOC131008684`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycosyltransferase family 92 protein RCOM_0530710
产物	glycosyltransferase family 92 protein RCOM_0530710
Arabidopsis	`AT5G40720` (AT5G40720) C3H4 type zinc finger protein (DUF23) [Source:NCBI gene (formerly Entrezgene);Acc:834072] identity=49.8; qcov=1.03; evalue=0; confidence=high
Rice	`Os08g0121900` - identity=50.4; qcov=0.948; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF01697 (Glyco_transf_92)
InterPro	-
eggNOG	-
NR	GeneID:131008684

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057791653.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057791653.1`
3	Nucleus	细胞核	0.00000	`XP_057791653.1`
4	Chromosome	染色体	0.00000	`XP_057791653.1`
5	Centromere	着丝粒	0.00000	`XP_057791653.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69334087`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C15
`Chr2:69334087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:69334177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr2:69334193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B13,D3
`Chr2:69334255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:69334551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:69334552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:69334660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B89,D11
`Chr2:69334781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C45
`Chr2:69334920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,A3,C2,C32,C68
`Chr2:69334975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,B77,C23
`Chr2:69335013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,A3,C2,C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791653.1

564 aa

282

564

Glyco_transf_92

PF01697 Glyco_transf_92 285-501 aa

XP_057791654.1

563 aa

282

563

Glyco_transf_92

PF01697 Glyco_transf_92 284-500 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791653.1`	Pfam	`PF01697`	Glyco_transf_92	Domain	285	501	2.8e-34	119.6	Glycosyltransferase family 92
`XP_057791654.1`	Pfam	`PF01697`	Glyco_transf_92	Domain	284	500	2.8e-34	119.6	Glycosyltransferase family 92

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935671.1
CCTAAAAAATGTAGGGGCAAAGGTTGTATTTTGGAGGAATAAAAGAAAGAAATTGTTAAAAGTCGTCTCGCATCCTTCATTCCATTCCAGCACTATGAAAGAAGAAAATACTCCATGAGAAAAAGGAGACAGTAACAGGGCATCCCGAGAGAGGGTTCAAGACTTCAAGTAGATGTTGCCATGTTGGAATTCAGACACACACCATACGACTAACGCCACTCTCTCACTAATTCGATTATAGACTCCTAATCCTAAACCAA...

XM_057935670.1
CTTCATTCCATTCCAGCACTATGAAAGAAGAAAATACTCCATGAGAAAAAGGAGACAGTAACAGGGCATCCCGAGAGAGGGTTCAAGACTTCAAGTAGATGTTGCCATGTTGGAATTCAGACACACACCATACGACTAACGCCACTCTCTCACTAATTCGATTATAGACTCCTAATCCTAAACCAACTCTAATTTCCCACTATTATTTATATACTATTCTTCCATATTTTGATGCTTGACTCCCACAAGCAAAGAATTTC...

CDS

2 records

下载 CDS FASTA

LOC131008684
ATGAAGGATCGCAGGAAACGCAGCGTTTTCTCATGGCAAGTACTCTTCTTCTTCCTCACCATCGTCCTCCTCTTCCTCGCCGCTTTCGCCTCCTCCGTCGCTCGCCTCTGGCTTGCAGGAAGTTTTCAGCCTAGACTTATACCAAAACGGAATATTCCGGCGATGGAGGTGATATCCGCGGAGAAATCCCAACCTCCGGCGGTAGTATCAGTTCGAGAAACGGTTATTTTCCCCGACGAGGCTGTGGTTTTCCTAAAATA...

LOC131008684
ATGAAGGATCGCAGGAAACGCAGCGTTTTCTCATGGCAAGTACTCTTCTTCTTCCTCACCATCGTCCTCCTCTTCCTCGCCGCTTTCGCCTCCTCCGTCGCTCGCCTCTGGCTTGCAGCAGGAAGTTTTCAGCCTAGACTTATACCAAAACGGAATATTCCGGCGATGGAGGTGATATCCGCGGAGAAATCCCAACCTCCGGCGGTAGTATCAGTTCGAGAAACGGTTATTTTCCCCGACGAGGCTGTGGTTTTCCTAAA...

Protein

2 records

下载 Protein FASTA

XP_057791653.1
MKDRRKRSVFSWQVLFFFLTIVLLFLAAFASSVARLWLAAGSFQPRLIPKRNIPAMEVISAEKSQPPAVVSVRETVIFPDEAVVFLKYPSSAFLFTRDDINCIYLPPNSSQPRLQLPPSAVDSDGESHHIVRCPAPPRGSILSLLIKHNGNNLAPGPMHRWDSLAYEAMIDNSDNTTLVFVKGLNLRSGRPATDPNKFKCVYGLDSAKPRFVLSADAVSAAQEVVRCRTPSSILNGSHRFSPNSDNSIKVSVRVVGRHEV...

XP_057791654.1
MKDRRKRSVFSWQVLFFFLTIVLLFLAAFASSVARLWLAGSFQPRLIPKRNIPAMEVISAEKSQPPAVVSVRETVIFPDEAVVFLKYPSSAFLFTRDDINCIYLPPNSSQPRLQLPPSAVDSDGESHHIVRCPAPPRGSILSLLIKHNGNNLAPGPMHRWDSLAYEAMIDNSDNTTLVFVKGLNLRSGRPATDPNKFKCVYGLDSAKPRFVLSADAVSAAQEVVRCRTPSSILNGSHRFSPNSDNSIKVSVRVVGRHEVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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