Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004699

染色体: Chr02 坐标: 69305938-69310750 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004699
名称SmilChr02G004699
描述glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向69305938 - 69310750 / -

ID 对照

NCBI Gene IDLOC131008690
GeneID131008690
locus_tag-
NCBI NameLOC131008690
原始查询LOC131008690

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform
产物glucose-6-phosphate 1-dehydrogenase%2C cytoplasmic isoform
ArabidopsisAT5G40760 (G6PD6)
glucose-6-phosphate dehydrogenase 6 [Source:NCBI gene (formerly Entrezgene);Acc:834076]
identity=86.1; qcov=0.992; evalue=0; confidence=high
RiceOs02g0600400 (OsG6PDH1)
-
identity=81.5; qcov=0.944; evalue=0; confidence=high
GOGO:0004345 (glucose-6-phosphate dehydrogenase activity); GO:0005829 (cytosol); GO:0006006 (glucose metabolic process); GO:0009051 (pentose-phosphate shunt, oxidative branch); GO:0050661 (NADP binding)
KEGGsmil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF00479 (G6PD_N); PF02781 (G6PD_C)
InterPro-
eggNOG-
NRGeneID:131008690

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057791667.1
2 Cytosol 细胞质基质 1.00000 XP_057791667.1
3 Nucleus 细胞核 0.00000 XP_057791667.1
4 Chromosome 染色体 0.00000 XP_057791667.1
5 Centromere 着丝粒 0.00000 XP_057791667.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:69306123 G A EMS_canonical_SNV CDS_variant 3 A5,B33,C19
Chr2:69306143 G A EMS_canonical_SNV CDS_variant 4 B56,B68,B96,C33
Chr2:69306595 C T EMS_canonical_SNV CDS_variant 4 A21,B13,C30,D3
Chr2:69307311 C T EMS_canonical_SNV CDS_variant 4 B36,B51,C51,C70
Chr2:69307325 TA T 1bp_deletion frameshift_variant 1 B89
Chr2:69307325 TA T 1bp_deletion CDS_variant 1 B89
Chr2:69307338 G A EMS_canonical_SNV CDS_variant 2 A7,C53
Chr2:69307815 G A EMS_canonical_SNV CDS_variant 1 B49
Chr2:69308466 G A EMS_canonical_SNV CDS_variant 2 B108,C78
Chr2:69309191 G A EMS_canonical_SNV CDS_variant 1 C62
Chr2:69309413 C T EMS_canonical_SNV CDS_variant 1 B14
Chr2:69309899 G A EMS_canonical_SNV CDS_variant 3 B47,C76,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791667.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
XP_057791668.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
XP_057791669.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
XP_057791671.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
XP_057791672.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
XP_057791673.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
XP_057791674.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
XP_057791675.1
515 aa
N
1
258
515
G6PD_N
G6PD_C
C
PF00479 G6PD_N 37-221 aa PF02781 G6PD_C 223-502 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791667.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791667.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain
XP_057791668.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791668.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain
XP_057791669.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791669.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain
XP_057791671.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791671.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain
XP_057791672.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791672.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain
XP_057791673.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791673.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain
XP_057791674.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791674.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain
XP_057791675.1 Pfam PF00479 G6PD_N Domain 37 221 1.5e-58 199.2 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057791675.1 Pfam PF02781 G6PD_C Domain 223 502 3.6e-113 378.3 Glucose-6-phosphate dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057935688.1
ACGAACATTTAATTTAAGCAACCAAATTGGTAGCTGCACATAGAGTGAGAGACAGATGGAGAGCTCTCTTGCCATCGCCCATCGCCCACCAACCCACAGTCTCACCATCTAGCGAAGTCAAATTAGACAACTCTTTGAAGTTCAACCGACAAATTGTTTTTTGATTGCTGCTCATTTTTGTTGCGATCAGCAGCTGCTAATCGAAAATTTATTTAGCTCTTGCGAATTCTAATGGCGGCGCCTTTGCGTGAATGGCACTG...
XM_057935684.1
ACGAACATTTAATTTAAGCAACCAAATTGGTAGCTGCACATAGAGTGAGAGACAGATGGAGAGCTCTCTTGCCATCGCCCATCGCCCACCAACCCACAGTCTCACCATCTAGCGAAGTCAAATTAGACAACTCTTTGAAGTTCAACGTATCATCGCTTAAGCTTCCCTACCTTGTCCGCTCTCTCTCGCTCTTTGCAAATCTCAATTCACAACTGCAGTATTTACACCATCTTTTCACCTACTTTTTTGCAGCGACAAAT...

CDS

8 records

下载 CDS FASTA
LOC131008690
ATGGCGGCGCCTTTGCGTGAATGGCACTGTGAAAAGAGGCCTTTTGCTAAGAGCGAATCTTTTGCGAATAATAATGAGAATGTGCCTGAAACTGGCTGCCTCTCCATCATTGTTCTTGGTGCTTCCGGCGATCTTGCTAAGAAGAAGACGTTTCCTGCACTCTTCAACCTTTACCGGCAGGGATTTTTGCAATTAAATGATGTTCACATATTCGGTTATGCAAGGACCAAGATCTCTGATGGTGAATTGAGAGATCGGAT...
LOC131008690
ATGGCGGCGCCTTTGCGTGAATGGCACTGTGAAAAGAGGCCTTTTGCTAAGAGCGAATCTTTTGCGAATAATAATGAGAATGTGCCTGAAACTGGCTGCCTCTCCATCATTGTTCTTGGTGCTTCCGGCGATCTTGCTAAGAAGAAGACGTTTCCTGCACTCTTCAACCTTTACCGGCAGGGATTTTTGCAATTAAATGATGTTCACATATTCGGTTATGCAAGGACCAAGATCTCTGATGGTGAATTGAGAGATCGGAT...

Protein

8 records

下载 Protein FASTA
XP_057791667.1
MAAPLREWHCEKRPFAKSESFANNNENVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQLNDVHIFGYARTKISDGELRDRIRGYLPHGNDGKEEVENFLLLIKYVSGSYDAPEGFQALDKAISEHEFSKKSTEGSSRRLFYLALPPSVYPPVCRMIKSYCMNKSDLGGWTRIVVEKPFGKDLESAEELSSQIGELFEEPQIYRIDHYLGKELVQNLLVLRFANRLFLPLWNRDNIANVQIVFREDFGTEGRGGY...
XP_057791668.1
MAAPLREWHCEKRPFAKSESFANNNENVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQLNDVHIFGYARTKISDGELRDRIRGYLPHGNDGKEEVENFLLLIKYVSGSYDAPEGFQALDKAISEHEFSKKSTEGSSRRLFYLALPPSVYPPVCRMIKSYCMNKSDLGGWTRIVVEKPFGKDLESAEELSSQIGELFEEPQIYRIDHYLGKELVQNLLVLRFANRLFLPLWNRDNIANVQIVFREDFGTEGRGGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器