Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004726`

染色体: Chr02 坐标: 69505907-69508790 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004726`
名称	SmilChr02G004726
描述	uncharacterized SmilChr02G004726
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69505907 - 69508790 / `+`

ID 对照

NCBI Gene ID	`LOC131008704`
GeneID	`131008704`
locus_tag	`-`
NCBI Name	`LOC131008704`
原始查询	`LOC131008704`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822376]; symbol=AT3G27540; hit=AT3G27540; species=arabidopsis; confidence=high
产物	beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822376]; symbol=AT3G27540; hit=AT3G27540; species=arabidopsis; confidence=high
Arabidopsis	`AT3G27540` (AT3G27540) beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822376] identity=71.6; qcov=0.928; evalue=0; confidence=high
Rice	`Os04g0477500` (OsSTA124) - identity=69.2; qcov=0.926; evalue=0; confidence=high
GO	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity); GO:0006044 (N-acetylglucosamine metabolic process); GO:0006487 (protein N-linked glycosylation); GO:0016020 (membrane)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04724 (Glyco_transf_17)
InterPro	-
eggNOG	-
NR	GeneID:131008704

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057791699.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057791699.1`
3	Nucleus	细胞核	0.00000	`XP_057791699.1`
4	Chromosome	染色体	0.00000	`XP_057791699.1`
5	Centromere	着丝粒	0.00000	`XP_057791699.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69506733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr2:69507551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B55,B70,C74,C81,C82
`Chr2:69507626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:69507740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:69507893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr2:69507920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C44
`Chr2:69507995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B70,C33,C62,C82
`Chr2:69508256`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B70,C33,C62,C82,D11
`Chr2:69508328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B129,C12,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791699.1

417 aa

208

417

Glyco_transf_17

PF04724 Glyco_transf_17 71-415 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791699.1`	Pfam	`PF04724`	Glyco_transf_17	Family	71	415	1.2e-175	584.4	Glycosyltransferase family 17

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935716.1
GGGGACATGGATATTTAATACTATAATCTCATACATCATAATATCCTTTTTTCTGAGGTAACTCATACGTCATAATATCTGTATAGATCAAATATGTGCAAATATTTTCTAATAAACTCGGAGACTTTATTTTTGATGGATTTATATTTATTACAAAAAGAAGAAGAAGAAGAAGGTGATGGTGATGGTGTTTAGGATTGGGACAAAATTGTAAAATTGTTAGAACAACGTACCATGCGGTCATCCGCATATTTTTGCTT...

CDS

1 records

下载 CDS FASTA

LOC131008704
ATGTGTAATTCTTCACGGAGAGGAAGAGGGATTAGAGAGAGAAAGGAAAGCTGTATGAACATTGAGAGAGAGAAAGCTTGCGCCCGGATGATTTCTGATGGTTATTATACTTCCAAAAAAAGTGATGAGATATGCGAAGATGATTGTGACGAGCAAGCTTCCCCATCATTTGTAACCATGTCGAGACTCCGTTGCTTCCTCCACGGTGTAGATTTCAGAGTAGTTTTCTTCTTCCTCCTCATTGCCCCGGCAGGGGTCTT...

Protein

1 records

下载 Protein FASTA

XP_057791699.1
MCNSSRRGRGIRERKESCMNIEREKACARMISDGYYTSKKSDEICEDDCDEQASPSFVTMSRLRCFLHGVDFRVVFFFLLIAPAGVFTIYCHGQKLTYFLRPLWESPPKPFIPLTHYYNQNVSMTTLCKLHGWGIREFPRRVYDAVLFSNEVDMLTIRWKELYPYITQYVLLESNSTFTGLPKPHNFAIHRDQFKFIEPRLTYGEIGGRFRRGENPFVEEAYQRLALDQLLRVAGIEDDDLLIMSDVDEIPSGHTIDLLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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