Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004745

染色体: Chr02 坐标: 69663059-69666520 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004745
名称SmilChr02G004745
描述phosphoenolpyruvate/phosphate translocator 2, chloroplastic
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向69663059 - 69666520 / +

ID 对照

NCBI Gene IDLOC131008705
GeneID131008705
locus_tag-
NCBI NameLOC131008705
原始查询LOC131008705

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述phosphoenolpyruvate/phosphate translocator 2, chloroplastic
产物phosphoenolpyruvate/phosphate translocator 2%2C chloroplastic
ArabidopsisAT3G01550 (PPT2)
phosphoenolpyruvate (pep)/phosphate translocator 2 [Source:NCBI gene (formerly Entrezgene);Acc:821114]
identity=65.3; qcov=0.815; evalue=4.93e-145; confidence=high
RiceOs08g0344600 (PPT2)
-
identity=63.5; qcov=0.791; evalue=1.28e-142; confidence=high
GOGO:0005794 (Golgi apparatus); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG-
PfamPF00892 (EamA); PF03151 (TPT)
InterPro-
eggNOG-
NRGeneID:131008705

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057791700.1
2 Chloroplast membrane 叶绿体膜 1.00000 XP_057791700.1
3 Nucleus 细胞核 0.00000 XP_057791700.1
4 Chromosome 染色体 0.00000 XP_057791700.1
5 Centromere 着丝粒 0.00000 XP_057791700.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:69663270 G A EMS_canonical_SNV CDS_variant 4 B20,B31,B81,B9
Chr2:69663279 A AC 1bp_insertion frameshift_variant 11 A25,B19,B23,B5,B60,B75,B86,C12,C17,C18,C28
Chr2:69663309 G A EMS_canonical_SNV CDS_variant 1 C69
Chr2:69663345 C T EMS_canonical_SNV CDS_variant 4 B129,C29,C37,C75
Chr2:69663373 G A EMS_canonical_SNV CDS_variant 3 A20,C54,C59
Chr2:69663406 C T EMS_canonical_SNV stop_gained 14 A21,A9,B123,B13,B21,B3,B4,B51,B56,B7,B96,C11,C26,C36
Chr2:69663418 A AT 1bp_insertion frameshift_variant 5 B18,B56,B69,B96,D7
Chr2:69663418 A AT 1bp_insertion CDS_variant 5 B18,B56,B69,B96,D7
Chr2:69663435 C T EMS_canonical_SNV CDS_variant 5 B18,B56,B69,B96,D7
Chr2:69663444 C T EMS_canonical_SNV CDS_variant 2 D11,D8
Chr2:69663446 G A EMS_canonical_SNV CDS_variant 3 B133,B17,C64
Chr2:69663449 G A EMS_canonical_SNV CDS_variant 3 B25,C23,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057791700.1
406 aa
N
1
203
406
TPT
EamA
C
PF03151 TPT 103-396 aa PF00892 EamA 121-238 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791700.1 Pfam PF03151 TPT Family 103 396 6e-118 394.2 Triose-phosphate Transporter family
XP_057791700.1 Pfam PF00892 EamA Domain 121 238 5e-17 63.2 EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057935717.1
ATATTGAAATTTAATCCTTCGTCCCAAAACTAGCAAGTGTAGAGAATAGCAGCTCCATAAAGTGAAGCCCACAAAATAACTGAATTGAGTGTCACGAGTTTGAAACCACACGTGATTTATGGAGGCTATTTTTTGGTAGCAGCAACAAAATCTGACCCCCACAAAAAACATGCCTCCAATTGAATTGAAGCTGCATGAATAATCCTCACAAGGCTTCAAAAACACACAACATGGCAACTAATTATGCATTGGCTCTCTCA...

CDS

1 records

下载 CDS FASTA
LOC131008705
ATGAATAATCCTCACAAGGCTTCAAAAACACACAACATGGCAACTAATTATGCATTGGCTCTCTCAACTCCGAAGCCATTCATCACTTGCCTCAAGCAATCATCATTTCATTGCAGATTAGCGGCAATCAATAATATTCCAAAATCTTGTGACCAGAAACATGTCATTTTTTCAAATCCAAACTCGAATTTCAGCAGCAGAAACCTCGTACACAGCAGCAGGAGATTGTCCGATTTCAAGCTCAGATCGGCAGCTCTTCC...

Protein

1 records

下载 Protein FASTA
XP_057791700.1
MNNPHKASKTHNMATNYALALSTPKPFITCLKQSSFHCRLAAINNIPKSCDQKHVIFSNPNSNFSSRNLVHSSRRLSDFKLRSAALPESRSERAKADKLLRTLQLAAMFAVWYLLNIYFNIFNKQVLKVYHFPATLTAFQFGCGTVIILLMWGFNLYPKPKINKSQFLQIFLLAVGHTLGNLLTNISLGKVAVSFTHTIKAMEPFFTVLLSVLFFGERPSPWVVSSLVPIVGGVALASCTEVSFNWIGFGTAMASNVTNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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