Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004738`

染色体: Chr02 坐标: 69587773-69590488 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004738`
名称	SmilChr02G004738
描述	uncharacterized SmilChr02G004738
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69587773 - 69590488 / `-`

ID 对照

NCBI Gene ID	`LOC131008708`
GeneID	`131008708`
locus_tag	`-`
NCBI Name	`LOC131008708`
原始查询	`LOC131008708`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834047]; symbol=AT5G40490; hit=AT5G40490; species=arabidopsis; confidence=medium
产物	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834047]; symbol=AT5G40490; hit=AT5G40490; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G40490` (AT5G40490) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834047] identity=70; qcov=0.592; evalue=2.57e-98; confidence=medium
Rice	`Os08g0492100` - identity=52.1; qcov=0.942; evalue=1.71e-86; confidence=high
GO	GO:0003723 (RNA binding); GO:0005654 (nucleoplasm); GO:0010468 (regulation of gene expression)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1); PF16367 (RRM_7)
InterPro	-
eggNOG	-
NR	GeneID:131008708

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791703.1`
2	Cytoplasm	细胞质	0.80000	`XP_057791703.1`
3	Nucleoplasm	核质	0.40000	`XP_057791703.1`
4	Chromosome	染色体	0.00000	`XP_057791703.1`
5	Centromere	着丝粒	0.00000	`XP_057791703.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69587985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C1
`Chr2:69588019`	`C`	`CTG`	2bp_insertion	frameshift_variant	139	A1,A10,A11,A13,A14,A16,A18,A19,A2,A20,A22,A23,A24,A3,A4,A6,A8,B100,B102,B103,B106,B107,B111,B112,B113,B115,B117,B118,B12,B122,B123,B124,B125,B129,B130,B137,B138,B139,B14,B15,B16,B18,B2,B20,B21,B23,B25,B28,B32,B33,B34,B38,B39,B41,B42,B43,B45,B46,B5,B50,B51,B52,B55,B56,B57,B58,B6,B61,B63,B65,B67,B68,B69,B7,B72,B73,B76,B77,B78,B80,B85,B91,B94,B95,B96,B97,B98,C13,C14,C16,C18,C19,C20,C21,C25,C26,C27,C30,C32,C34,C35,C37,C38,C42,C44,C45,C47,C48,C49,C50,C52,C53,C56,C57,C59,C61,C64,C66,C67,C68,C70,C71,C72,C73,C74,C76,C77,C79,C8,C80,C81,C82,C83,C85,D11,D3,D4,D6,D8
`Chr2:69588023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr2:69588033`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,C30,C36,C67,C79
`Chr2:69588039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C47,C71
`Chr2:69588063`	`AAC`	`A`	2bp_deletion	frameshift_variant	29	A19,A23,A8,B100,B107,B112,B115,B118,B125,B17,B32,B39,B41,B47,B52,B61,B63,B69,B73,B85,B94,C16,C35,C45,C48,C56,C71,C76,D8
`Chr2:69588066`	`C`	`CAG`	2bp_insertion	frameshift_variant	29	A19,A23,A8,B100,B107,B112,B115,B118,B125,B17,B32,B39,B41,B47,B52,B61,B63,B69,B73,B85,B94,C16,C35,C45,C48,C56,C71,C76,D8
`Chr2:69588256`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C53
`Chr2:69588256`	`TA`	`T`	1bp_deletion	CDS_variant	1	C53
`Chr2:69588280`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C53
`Chr2:69588280`	`TA`	`T`	1bp_deletion	CDS_variant	1	C53
`Chr2:69588405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791703.1

377 aa

188

377

RRM_1

RRM_7

RRM_1

PF00076 RRM_1 46-113 aa PF16367 RRM_7 131-193 aa PF00076 RRM_1 133-202 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791703.1`	Pfam	`PF00076`	RRM_1	Domain	46	113	2.1e-33	114.7	RNA recognition motif
`XP_057791703.1`	Pfam	`PF16367`	RRM_7	Domain	131	193	2.4e-15	57.0	RNA recognition motif
`XP_057791703.1`	Pfam	`PF00076`	RRM_1	Domain	133	202	2.1e-33	114.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935720.1
CAAAATTAATTTCAAAGAATTTCAGCCAATTTAGTTGGATTGTACATATAGATTGTGAGCGGCAGTGGTGGAATACTTATGCCTAATTGGTCCGAAAAAAATCAAAATTCAACCTCTTAAGGAAAGTGCAGATCAAGAAGATAAAATCCGACGATCCGGATTAACCCTGATATAGGGTTTACAGATAAGTTCAAAACCGCCGACAAACTTACTGGAGCTTCGTAGACCAAACGGCAAGCACACCCGTATCTCAACCACAT...

CDS

1 records

下载 CDS FASTA

LOC131008708
ATGGACGAAGACCGGAATTTTAGTGAATCCGACCCCATGCCGGATAATCAGGACGACGACGTTGCCAGGACTCCTAATCATGTGAATTCTGATCATTCCCATCCACATACCGGCGATGGAGCTAGCCCCGGTAAAATTTTCATCGGAGGTCTAGCTCGAGAAACAACGTCTGATCAATTTATCAAGCACTTTGGTAAATATGGGGAGATTACGGATTCAGTGATAATGAAGGATAGGAACACAGGGCAGCCCCGGGGGTT...

Protein

1 records

下载 Protein FASTA

XP_057791703.1
MDEDRNFSESDPMPDNQDDDVARTPNHVNSDHSHPHTGDGASPGKIFIGGLARETTSDQFIKHFGKYGEITDSVIMKDRNTGQPRGFGFVTYADASVVDRVIEDTHIINGKQVEIKRTIPRGAHSKDFKTKKIFVGGIPTTVDDDEFRDFFSNYGEVKEQQIMRDHSSGRSRGFGFITFESDQSVDDLLAKGNRLDFSGTQVEIKKAEPKKTNLPPAPSRRPSNTRVAFGGGHREPYGGYDGGFGSGGFGGSSYRSSGVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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