Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004720`

染色体: Chr02 坐标: 69449774-69452899 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004720`
名称	SmilChr02G004720
描述	uncharacterized SmilChr02G004720
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69449774 - 69452899 / `-`

ID 对照

NCBI Gene ID	`LOC131008710`
GeneID	`131008710`
locus_tag	`-`
NCBI Name	`LOC131008710`
原始查询	`LOC131008710`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831290]; symbol=AT5G14390; hit=AT5G14390; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831290]; symbol=AT5G14390; hit=AT5G14390; species=arabidopsis; confidence=high
Arabidopsis	`AT5G14390` (AT5G14390) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831290] identity=70.6; qcov=1.04; evalue=0; confidence=high
Rice	`Os12g0286600` (OsPOP23) - identity=67.7; qcov=1.04; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF01738 (DLH); PF03959 (FSH1); PF12146 (Hydrolase_4)
InterPro	-
eggNOG	-
NR	GeneID:131008710

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791706.1`
2	Cytosol	细胞质基质	0.40000	`XP_057791706.1`
3	Cytoplasm	细胞质	0.20000	`XP_057791706.1`
4	Nucleus	细胞核	0.00000	`XP_057791706.1`
5	Chromosome	染色体	0.00000	`XP_057791706.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69450043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B59,C15,C44
`Chr2:69450104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B21,B56,B96,C74
`Chr2:69450109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B35,C2,C32,C68
`Chr2:69450175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:69450235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,B66
`Chr2:69450314`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:69450338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B7
`Chr2:69450746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr2:69450761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,D11
`Chr2:69450939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr2:69450944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D11,D7
`Chr2:69450961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791706.1

358 aa

179

358

Hydrolase_4

Abhydrolase_1

Peptidase_S9

DLH

FSH1

PF12146 Hydrolase_4 70-175 aa PF00561 Abhydrolase_1 71-171 aa PF00326 Peptidase_S9 116-230 aa PF01738 DLH 116-230 aa PF03959 FSH1 161-239 aa

XP_057791707.1

358 aa

179

358

Hydrolase_4

Abhydrolase_1

Peptidase_S9

DLH

FSH1

PF12146 Hydrolase_4 70-175 aa PF00561 Abhydrolase_1 71-171 aa PF00326 Peptidase_S9 116-230 aa PF01738 DLH 116-230 aa PF03959 FSH1 161-239 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791706.1`	Pfam	`PF12146`	Hydrolase_4	Domain	70	175	3.2e-13	50.3	Serine aminopeptidase, S33
`XP_057791706.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	71	171	1.5e-10	41.9	alpha/beta hydrolase fold
`XP_057791706.1`	Pfam	`PF00326`	Peptidase_S9	Domain	116	230	1.3e-06	28.8	Prolyl oligopeptidase family
`XP_057791706.1`	Pfam	`PF01738`	DLH	Domain	116	230	2.9e-05	24.5	Dienelactone hydrolase family
`XP_057791706.1`	Pfam	`PF03959`	FSH1	Domain	161	239	0.00011	22.7	Serine hydrolase (FSH1)
`XP_057791707.1`	Pfam	`PF12146`	Hydrolase_4	Domain	70	175	3.2e-13	50.3	Serine aminopeptidase, S33
`XP_057791707.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	71	171	1.5e-10	41.9	alpha/beta hydrolase fold
`XP_057791707.1`	Pfam	`PF00326`	Peptidase_S9	Domain	116	230	1.3e-06	28.8	Prolyl oligopeptidase family
`XP_057791707.1`	Pfam	`PF01738`	DLH	Domain	116	230	2.9e-05	24.5	Dienelactone hydrolase family
`XP_057791707.1`	Pfam	`PF03959`	FSH1	Domain	161	239	0.00011	22.7	Serine hydrolase (FSH1)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935724.1
TTTTTTTTTTTTTCATTTTTCATCTTCACATTATAAAGTTTCAATCAAAGTAAATGACAATAATTTCACACTCTCATGGAATAAAATAGAGAAGCTTGGGGTTGAATCGAGTAGGATGGTTAAGAAAAGATGAATGAAAAAAACATAGTTAAGAAAAAAGATGATGAAGATTATTGTGTTGTGTTGTAATTAGGGGGTGTTGAGAATGAGAAATAGAGGAGAAGAGAGTAGTGTATTATGAAGTCGGAAAGCAAACACGG...

XM_057935723.1
GGTTAAGAAAAGATGAATGAAAAAAACATAGTTAAGAAAAAAGATGATGAAGATTATTGTGTTGTGTTGTAATTAGGGGGTGTTGAGAATGAGAAATAGAGGAGAAGAGAGTAGTGTATTATGAAGTCGGAAAGCAAACACGGCATGTGGGGGCATCAGCCACCATCTTCCAAACCAGAAGATGACACAAATTGGAAATATGGAGTTAGCACAAATTCGGGGGCGCAGGCCTACTCATGTCCCTTTCCATCCCCCCCATT...

CDS

2 records

下载 CDS FASTA

LOC131008710
ATGGGTGGCGTGACGTCGTCCATGGCGGCGAAGCTGGCCTTCTTTCCGCCTAATCCGGCGTCGTACAAGCTGGTGCACGACGACGTCACGGGTTTGCTGCTGCTGAGCCCTTTCCCCCACCGCGAGAACGTGGAGGTGATGCGGCTGCCCACGCGGCGGGGCTCCGAGATCGTGGCGGTGTACGTCCGCCACCCCATGGCCACCTCCACGCTTCTCTACTCGCATGGCAATGCCACCGATCTCGGACAGATGTACGAGCT...

Protein

2 records

下载 Protein FASTA

XP_057791706.1
MGGVTSSMAAKLAFFPPNPASYKLVHDDVTGLLLLSPFPHRENVEVMRLPTRRGSEIVAVYVRHPMATSTLLYSHGNATDLGQMYELFIELSIHLRLNLLGYDYSGYGQSSGKASEHNTYADIEAAFKCLEENYGTKQEDVILYGQSVGSGPTLDLAARLPRVRAVVLHSPILSGVRVMYAVKKTYWFDIYKNIDKITLVNCPVLIIHGTADEVVDFSHGKQLWELCKEKYEPLWIKGGNHCNLELYPEYIRHLKKFVAT...

XP_057791707.1
MGGVTSSMAAKLAFFPPNPASYKLVHDDVTGLLLLSPFPHRENVEVMRLPTRRGSEIVAVYVRHPMATSTLLYSHGNATDLGQMYELFIELSIHLRLNLLGYDYSGYGQSSGKASEHNTYADIEAAFKCLEENYGTKQEDVILYGQSVGSGPTLDLAARLPRVRAVVLHSPILSGVRVMYAVKKTYWFDIYKNIDKITLVNCPVLIIHGTADEVVDFSHGKQLWELCKEKYEPLWIKGGNHCNLELYPEYIRHLKKFVAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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