当前解析结果
SmilChr02G004698| 统一新 Gene ID | SmilChr02G004698 |
|---|---|
| 名称 | SmilChr02G004698 |
| 描述 | glyceraldehyde-3-phosphate dehydrogenase, cytosolic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69299539 - 69303084 / - |
| NCBI Gene ID | LOC131008716 |
|---|---|
| GeneID | 131008716 |
| locus_tag | - |
| NCBI Name | LOC131008716 |
| 原始查询 | LOC131008716 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glyceraldehyde-3-phosphate dehydrogenase, cytosolic |
| 产物 | glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic |
| Arabidopsis | AT3G04120 (GAPC1)glyceraldehyde-3-phosphate dehydrogenase C subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:819567] identity=89.8; qcov=0.985; evalue=0; confidence=high |
| Rice | Os04g0486600 (GAPDH)- identity=90.7; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0006006 (glucose metabolic process); GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor); GO:0050661 (NADP binding); GO:0051287 (NAD binding) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00044 (Gp_dh_N); PF02800 (Gp_dh_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008716 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791714.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057791714.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791714.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791714.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791714.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69299771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr2:69299792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,C76,D8 |
Chr2:69299945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:69299951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:69300259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,C35,C4 |
Chr2:69300358 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B32,B91,C62 |
Chr2:69300845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:69301243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,B77,C23 |
Chr2:69301244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C78 |
Chr2:69301494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr2:69301718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C78 |
Chr2:69302556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791714.1PF00044
Gp_dh_N 4-106 aa
PF02800
Gp_dh_C 153-318 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791714.1 |
Pfam | PF00044 |
Gp_dh_N | Domain | 4 | 106 | 3.1e-34 | 118.0 | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain |
XP_057791714.1 |
Pfam | PF02800 |
Gp_dh_C | Domain | 153 | 318 | 6e-75 | 251.3 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。