Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004773`

染色体: Chr02 坐标: 69896025-69902499 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004773`
名称	SmilChr02G004773
描述	uncharacterized SmilChr02G004773
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69896025 - 69902499 / `+`

ID 对照

NCBI Gene ID	`LOC131008727`
GeneID	`131008727`
locus_tag	`-`
NCBI Name	`LOC131008727`
原始查询	`LOC131008727`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=high
产物	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=high
Arabidopsis	`AT3G01410` (AT3G01410) Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=52.8; qcov=1.02; evalue=8.36e-99; confidence=high
Rice	`Os08g0177800` - identity=51.1; qcov=0.979; evalue=8.1e-91; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity)
KEGG	-
Pfam	PF00075 (RNase_H); PF13456 (RVT_3)
InterPro	-
eggNOG	-
NR	GeneID:131008727

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057791733.1`
2	Nucleus	细胞核	0.80000	`XP_057791733.1`
3	Cytosol	细胞质基质	0.20000	`XP_057791733.1`
4	Chromosome	染色体	0.00000	`XP_057791733.1`
5	Centromere	着丝粒	0.00000	`XP_057791733.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69896521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr2:69897348`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C17,C28,C85
`Chr2:69897350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B85,C33,C62
`Chr2:69897366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr2:69897677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B47,C13,C60,C61
`Chr2:69898366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:69898599`	`T`	`TTC`	2bp_insertion	frameshift_variant	84	A20,A21,A4,A6,A7,B10,B100,B103,B106,B107,B108,B109,B110,B113,B117,B121,B124,B128,B129,B131,B135,B137,B17,B22,B27,B37,B38,B39,B41,B42,B44,B5,B53,B54,B56,B58,B60,B62,B64,B67,B70,B72,B73,B8,B81,B83,B84,B87,B89,B95,B96,B99,C11,C12,C13,C16,C20,C22,C26,C28,C29,C30,C32,C35,C39,C4,C42,C43,C48,C49,C52,C53,C54,C6,C61,C71,C73,C78,C79,C80,C81,D3,D8,D9
`Chr2:69898602`	`GAT`	`G`	2bp_deletion	frameshift_variant	15	B10,B110,B128,B44,B54,B56,B58,B67,B72,C28,C30,C35,C5,C52,C78
`Chr2:69900541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:69900949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:69900955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791733.1

281 aa

140

281

RNase_H

RVT_3

PF00075 RNase_H 145-241 aa PF13456 RVT_3 145-265 aa

XP_057791734.1

281 aa

140

281

RNase_H

RVT_3

PF00075 RNase_H 145-241 aa PF13456 RVT_3 145-265 aa

XP_057791735.1

280 aa

140

280

RNase_H

RVT_3

PF00075 RNase_H 144-240 aa PF13456 RVT_3 144-264 aa

XP_057791736.1

280 aa

140

280

RNase_H

RVT_3

PF00075 RNase_H 144-240 aa PF13456 RVT_3 144-264 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791733.1`	Pfam	`PF00075`	RNase_H	Domain	145	241	3.2e-07	31.3	RNase H
`XP_057791733.1`	Pfam	`PF13456`	RVT_3	Domain	145	265	5.4e-25	88.4	Reverse transcriptase-like
`XP_057791734.1`	Pfam	`PF00075`	RNase_H	Domain	145	241	3.2e-07	31.3	RNase H
`XP_057791734.1`	Pfam	`PF13456`	RVT_3	Domain	145	265	5.4e-25	88.4	Reverse transcriptase-like
`XP_057791735.1`	Pfam	`PF00075`	RNase_H	Domain	144	240	3.2e-07	31.3	RNase H
`XP_057791735.1`	Pfam	`PF13456`	RVT_3	Domain	144	264	5.4e-25	88.4	Reverse transcriptase-like
`XP_057791736.1`	Pfam	`PF00075`	RNase_H	Domain	144	240	3.2e-07	31.3	RNase H
`XP_057791736.1`	Pfam	`PF13456`	RVT_3	Domain	144	264	5.4e-25	88.4	Reverse transcriptase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057935750.1
AAGAAAGAATAAAGATTTGAGAAACGGAGTAAAATGATAAAAAAAAAAAAAAAAAAATTGAAAAACGGAGCTAGTTTTTTATCTCTCCCCCTCAGTTAACAAAAAAGAACCCCCAAAAAAGAGAGAGGGAAAATTCCACTCATTTTCTGAGTTGAAATTCCTCTTAATCACGGGAATACGAAAGGTAGGGTTTCCACTTTCAATTGCCGATACTGCAACTTCCACTTTCAGATTAGGTGAATGCTTATCGCCGCTGGCTT...

XM_057935753.1
ATAAAGATTTGAGAAACGGAGTAAAATGATAAAAAAAAAAAAAAAAAAATTGAAAAACGGAGCTAGTTTTTTATCTCTCCCCCTCAGTTAACAAAAAAGAACCCCCAAAAAAGAGAGAGGGAAAATTCCACTCATTTTCTGAGTTGAAATTCCTCTTAATCACGGGAATACGAAAGGGTTTCCACTTTCAATTGCCGATACTGCAACTTCCACTTTCAGATTAGGTGAATGCTTATCGCCGCTGGCTTCGGAATCCTGCT...

CDS

4 records

下载 CDS FASTA

LOC131008727
ATGGGGGATGAAAAGGACGCCTTTTACGTTGTGTGGAAGGGGGATATTATTGGAGTCTATAAGAGCATCAATGATCTTGAATCTGTTCTTCGATCTTCGGTGAATGATACTTCTGTTCGCGTGTTCAAAGGGTATGGTTTGACTAAAGAAGCTGACGCGTACCTCTCGTCACACGGACTTAAGAATGCTATCTATTCTGTTGATGCCAGTGAAGTGCAAGATGACCGTTTTGGCCAACTTATCATATGCCCTTTTCGTGA...

Protein

4 records

下载 Protein FASTA

XP_057791733.1
MGDEKDAFYVVWKGDIIGVYKSINDLESVLRSSVNDTSVRVFKGYGLTKEADAYLSSHGLKNAIYSVDASEVQDDRFGQLIICPFREPNSSTSKSSSKNHQEKRPQQEIVGSASFAANQIKPSKLDDFLQGLPVSSYCSSCIIEFDGASKGNPGQAGAGAVLRSANGSMVFRLREGVGIATNNVAEYRGAILGLRFALSKGFKYIRMQGDSKLVCMQVQGLWRTKTQNMADLCKVAKEFKDQFASFEIRHVERECNTEAD...

XP_057791734.1
MGDEKDAFYVVWKGDIIGVYKSINDLESVLRSSVNDTSVRVFKGYGLTKEADAYLSSHGLKNAIYSVDASEVQDDRFGQLIICPFREPNSSTSKSSSKNHQEKRPQQEIVGSASFAANQIKPSKLDDFLQGLPVSSYCSSCIIEFDGASKGNPGQAGAGAVLRSANGSMVFRLREGVGIATNNVAEYRGAILGLRFALSKGFKYIRMQGDSKLVCMQVQGLWRTKTQNMADLCKVAKEFKDQFASFEIRHVERECNTEAD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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