当前解析结果
SmilChr02G004783| 统一新 Gene ID | SmilChr02G004783 |
|---|---|
| 名称 | SmilChr02G004783 |
| 描述 | protein MICROTUBULE BINDING PROTEIN 2C |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70010225 - 70014037 / + |
| NCBI Gene ID | LOC131008774 |
|---|---|
| GeneID | 131008774 |
| locus_tag | - |
| NCBI Name | LOC131008774 |
| 原始查询 | LOC131008774 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein MICROTUBULE BINDING PROTEIN 2C |
| 产物 | protein MICROTUBULE BINDING PROTEIN 2C |
| Arabidopsis | AT5G08120 (MPB2C)movement protein binding protein 2C [Source:NCBI gene (formerly Entrezgene);Acc:830707] identity=48.2; qcov=0.997; evalue=2.82e-89; confidence=high |
| Rice | Os06g0284800- identity=40.9; qcov=0.874; evalue=8.91e-59; confidence=medium |
| GO | GO:0008017 (microtubule binding); GO:0010497 (plasmodesmata-mediated intercellular transport) |
| KEGG | - |
| Pfam | PF30916 (MBP2C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008774 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057791783.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057791783.1 |
| 3 | Cell projection | 细胞突起 | 0.40000 | XP_057791783.1 |
| 4 | Spindle | Spindle | 0.20000 | XP_057791783.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057791783.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70010453 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B138 |
Chr2:70010453 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B138 |
Chr2:70010534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B138 |
Chr2:70010535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,B138 |
Chr2:70012113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:70012213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:70012218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:70012233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B52 |
Chr2:70012383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr2:70013245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr2:70013632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791783.1PF30916
MBP2C 10-331 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791783.1 |
Pfam | PF30916 |
MBP2C | Family | 10 | 331 | 1.4e-129 | 432.9 | Microtubule binding protein 2C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。