当前解析结果
SmilChr02G004786| 统一新 Gene ID | SmilChr02G004786 |
|---|---|
| 名称 | SmilChr02G004786 |
| 描述 | ADP,ATP carrier protein ER-ANT1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70022017 - 70025989 / + |
| NCBI Gene ID | LOC131008778 |
|---|---|
| GeneID | 131008778 |
| locus_tag | - |
| NCBI Name | LOC131008778 |
| 原始查询 | LOC131008778 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ADP,ATP carrier protein ER-ANT1 |
| 产物 | ADP%2CATP carrier protein ER-ANT1 |
| Arabidopsis | AT5G17400 (ER-ANT1)endoplasmic reticulum-adenine nucleotide transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:831606] identity=79.3; qcov=0.946; evalue=1.13e-172; confidence=high |
| Rice | Os11g0661300 (ER-ANT1)- identity=70.6; qcov=0.917; evalue=2.99e-147; confidence=high |
| GO | GO:0005471 (ATP:ADP antiporter activity); GO:0005743 (mitochondrial inner membrane); GO:0140021 (mitochondrial ADP transmembrane transport); GO:1990544 (mitochondrial ATP transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008778 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057791786.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057791786.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057791786.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057791786.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791786.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70023647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:70023736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C61,C8,D11,D3 |
Chr2:70023748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B15,C25,C45 |
Chr2:70024702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:70024754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B7,C42 |
Chr2:70024819 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B107,B140 |
Chr2:70024819 |
C |
CA |
1bp_insertion | CDS_variant | 2 | B107,B140 |
Chr2:70024827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B109,B114,B95,C34 |
Chr2:70024842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B13,B64,B75,C5 |
Chr2:70024930 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B107,B140 |
Chr2:70024930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:70025008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791786.1PF00153
Mito_carr 6-101 aa
PF00153
Mito_carr 113-203 aa
PF00153
Mito_carr 211-298 aa
XP_057791787.1PF00153
Mito_carr 6-101 aa
PF00153
Mito_carr 113-203 aa
PF00153
Mito_carr 211-298 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791786.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 6 | 101 | 2.9e-62 | 207.2 | Mitochondrial carrier protein |
XP_057791786.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 113 | 203 | 2.9e-62 | 207.2 | Mitochondrial carrier protein |
XP_057791786.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 211 | 298 | 2.9e-62 | 207.2 | Mitochondrial carrier protein |
XP_057791787.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 6 | 101 | 2.9e-62 | 207.2 | Mitochondrial carrier protein |
XP_057791787.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 113 | 203 | 2.9e-62 | 207.2 | Mitochondrial carrier protein |
XP_057791787.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 211 | 298 | 2.9e-62 | 207.2 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。