Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004831`

染色体: Chr02 坐标: 70416876-70426005 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004831`
名称	SmilChr02G004831
描述	uncharacterized SmilChr02G004831
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70416876 - 70426005 / `-`

ID 对照

NCBI Gene ID	`LOC131008824`
GeneID	`131008824`
locus_tag	`-`
NCBI Name	`LOC131008824`
原始查询	`LOC131008824`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os06g0235300; species=rice; confidence=low
产物	hit=Os06g0235300; species=rice; confidence=low
Arabidopsis	`-` -
Rice	`Os06g0235300` - identity=60.6; qcov=0.409; evalue=0; confidence=low
GO	-
KEGG	-
Pfam	PF16501 (SCAPER_N)
InterPro	-
eggNOG	-
NR	GeneID:131008824

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	0.60000	`XP_057791864.1`
2	Cytosol	细胞质基质	0.60000	`XP_057791864.1`
3	Phragmoplast	Phragmoplast	0.20000	`XP_057791864.1`
4	Cell membrane	细胞膜	0.20000	`XP_057791864.1`
5	Nucleus	细胞核	0.00000	`XP_057791864.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70417208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:70417231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:70417328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:70417363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B118,B24,D3
`Chr2:70417367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B130,C53
`Chr2:70417394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:70417453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr2:70417454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,D6
`Chr2:70417486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:70417576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B32
`Chr2:70419613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B34,B64,C5,C74
`Chr2:70420107`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791864.1

1669 aa

834

1669

SCAPER_N

PF16501 SCAPER_N 360-461 aa

XP_057791865.1

1669 aa

834

1669

SCAPER_N

PF16501 SCAPER_N 360-461 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791864.1`	Pfam	`PF16501`	SCAPER_N	Family	360	461	1.7e-14	54.3	S phase cyclin A-associated protein in the endoplasmic reticulum
`XP_057791865.1`	Pfam	`PF16501`	SCAPER_N	Family	360	461	1.7e-14	54.3	S phase cyclin A-associated protein in the endoplasmic reticulum

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935882.1
AACAGATCGGTCAGATATCGAAATCTTTCTTCCCAAAATCTCTCATTTTTTTTTATTATTATTCTCTTTTTATCCTTTTTCTTTTTATTTTTGTTCTACGTTGCATTTTTCATCGACTCTTAATTAAAAAGTATATACCTCAAAAAAAAAAAAAAAAGAAGTCCGACTCCCATGAATATGATCATTCTTTTCGCCCAAAATCTTTTCATTCCTCGTTGAGGAGAAAAGGAAAAAACAAATTGTGAATATGCTACACCAAA...

XM_057935881.1
AAAGAAGTCCGACTCCCATGAATATGATCATTCTTTTCGCCCAAAATCTTTTCATTCCTCGTTGAGGAGAAAAGGAAAAAACAAATTGTGAATATGCTACACCAAACTCTCTACTGACAATCAACTCCACATTTTCTTGAAAATTTTCACCTTCAATCAGTTCAAAACTCTGCGCCCGGCTGCTTTTCTATTCAAACTTTAGCGGCCATTTCTGAGGCATTTTCGCCCGGGGCCCTCAATTTATCACTATTCAACGAGAA...

CDS

2 records

下载 CDS FASTA

LOC131008824
ATGGAGAATAGTGATGGTGGAGATGATCAGGCTTCTGGATGGATGCAAGTGAAAAAGAAACACAGAAGCAATTTGAAGTTCTCATTACACGGTTGGGTTGAAGGGCTGTCTGGAAAACAGAGGTTTAGCAAGCCAAACAATCAAATTTCATTAGGTAAAAAATTGGAGAGTAGCTCAAATGCAACAAGCCAAAGAGATACTACTGGTAAAGATTGTGCCGTGCGTGAGCGTGTCAGCAGCAAGGCTACAGAGTCCACTTC...

Protein

2 records

下载 Protein FASTA

XP_057791864.1
MENSDGGDDQASGWMQVKKKHRSNLKFSLHGWVEGLSGKQRFSKPNNQISLGKKLESSSNATSQRDTTGKDCAVRERVSSKATESTSISTGNGAVQRCLDDDSANATKPTSNFDEDGAIDHYLDKRVVSQSNGDLGSSHLVAKNRVDPSHKVVVSQGSTHKDNVLPKIKWGDLDEGTLKHYGKASGAEFEFGGVKNNNLVSMKVDDAAECLPGIVPESHSSSPRSLSVEETDNEVNEVSSEDVKEKITSERIVSQSTSIS...

XP_057791865.1
MENSDGGDDQASGWMQVKKKHRSNLKFSLHGWVEGLSGKQRFSKPNNQISLGKKLESSSNATSQRDTTGKDCAVRERVSSKATESTSISTGNGAVQRCLDDDSANATKPTSNFDEDGAIDHYLDKRVVSQSNGDLGSSHLVAKNRVDPSHKVVVSQGSTHKDNVLPKIKWGDLDEGTLKHYGKASGAEFEFGGVKNNNLVSMKVDDAAECLPGIVPESHSSSPRSLSVEETDNEVNEVSSEDVKEKITSERIVSQSTSIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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