Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004834`

染色体: Chr02 坐标: 70459426-70471260 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004834`
名称	SmilChr02G004834
描述	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70459426 - 70471260 / `+`

ID 对照

NCBI Gene ID	`LOC131008829`
GeneID	`131008829`
locus_tag	`-`
NCBI Name	`LOC131008829`
原始查询	`LOC131008829`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
产物	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
Arabidopsis	`AT1G32490` (ESP3) RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840143] identity=76.2; qcov=1; evalue=0; confidence=high
Rice	`Os05g0389800` - identity=61.9; qcov=1.01; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005622 (intracellular anatomical structure); GO:0016887 (ATP hydrolysis activity); GO:0071013 (catalytic step 2 spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF13401 (AAA_22); PF21010 (HA2_C)
InterPro	-
eggNOG	-
NR	GeneID:131008829

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791873.1`
2	Cytoplasm	细胞质	0.60000	`XP_057791873.1`
3	Nucleolus	核仁	0.20000	`XP_057791876.1`
4	Cytosol	细胞质基质	0.20000	`XP_057791873.1`
5	Chromosome	染色体	0.00000	`XP_057791873.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70460522`	`C`	`CAA`	2bp_insertion	frameshift_variant	54	A10,A11,B1,B10,B103,B107,B109,B113,B119,B120,B126,B128,B130,B132,B133,B136,B139,B14,B28,B4,B47,B55,B61,B63,B67,B77,B78,B8,B81,B83,B84,B89,B91,B97,C2,C23,C32,C36,C39,C42,C44,C48,C50,C54,C55,C56,C59,C65,C68,C70,C74,D1,D3,D8
`Chr2:70460524`	`GCC`	`G`	2bp_deletion	frameshift_variant	54	A10,A11,B1,B10,B103,B107,B109,B113,B119,B120,B126,B128,B130,B132,B133,B136,B139,B14,B28,B4,B47,B55,B61,B63,B67,B77,B78,B8,B81,B83,B84,B89,B91,B97,C2,C23,C32,C36,C39,C42,C44,C48,C50,C54,C55,C56,C59,C65,C68,C70,C74,D1,D3,D8
`Chr2:70460531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B7,C42
`Chr2:70460773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C30,C85
`Chr2:70460989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:70460991`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B7,C12,C42
`Chr2:70461037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:70461080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:70461136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B20,B90,C21,C67,C73
`Chr2:70462800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B97,C48
`Chr2:70463485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B118,B16,B53,B71
`Chr2:70463504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791873.1

1047 aa

524

1047

AAA_22

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

PF13401 AAA_22 416-542 aa PF00271 Helicase_C 611-733 aa PF04408 WHD_HA2 795-823 aa PF21010 HA2_C 824-885 aa PF07717 OB_NTP_bind 943-1019 aa

XP_057791874.1

1047 aa

524

1047

AAA_22

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

PF13401 AAA_22 416-542 aa PF00271 Helicase_C 611-733 aa PF04408 WHD_HA2 795-823 aa PF21010 HA2_C 824-885 aa PF07717 OB_NTP_bind 943-1019 aa

XP_057791875.1

1047 aa

524

1047

AAA_22

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

PF13401 AAA_22 416-542 aa PF00271 Helicase_C 611-733 aa PF04408 WHD_HA2 795-823 aa PF21010 HA2_C 824-885 aa PF07717 OB_NTP_bind 943-1019 aa

XP_057791876.1

1044 aa

522

1044

AAA_22

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

PF13401 AAA_22 416-542 aa PF00271 Helicase_C 611-733 aa PF04408 WHD_HA2 795-823 aa PF21010 HA2_C 824-885 aa PF07717 OB_NTP_bind 943-1019 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791873.1`	Pfam	`PF13401`	AAA_22	Domain	416	542	3.5e-07	31.3	AAA domain
`XP_057791873.1`	Pfam	`PF00271`	Helicase_C	Domain	611	733	2.1e-11	44.8	Helicase conserved C-terminal domain
`XP_057791873.1`	Pfam	`PF04408`	WHD_HA2	Domain	795	823	9e-11	42.3	Helicase associated domain (HA2), winged-helix
`XP_057791873.1`	Pfam	`PF21010`	HA2_C	Domain	824	885	9.6e-12	46.0	Helicase associated domain (HA2), ratchet-like
`XP_057791873.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	943	1019	4.2e-24	85.3	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057791874.1`	Pfam	`PF13401`	AAA_22	Domain	416	542	3.5e-07	31.3	AAA domain
`XP_057791874.1`	Pfam	`PF00271`	Helicase_C	Domain	611	733	2.1e-11	44.8	Helicase conserved C-terminal domain
`XP_057791874.1`	Pfam	`PF04408`	WHD_HA2	Domain	795	823	9e-11	42.3	Helicase associated domain (HA2), winged-helix
`XP_057791874.1`	Pfam	`PF21010`	HA2_C	Domain	824	885	9.6e-12	46.0	Helicase associated domain (HA2), ratchet-like
`XP_057791874.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	943	1019	4.2e-24	85.3	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057791875.1`	Pfam	`PF13401`	AAA_22	Domain	416	542	3.5e-07	31.3	AAA domain
`XP_057791875.1`	Pfam	`PF00271`	Helicase_C	Domain	611	733	2.1e-11	44.8	Helicase conserved C-terminal domain
`XP_057791875.1`	Pfam	`PF04408`	WHD_HA2	Domain	795	823	9e-11	42.3	Helicase associated domain (HA2), winged-helix
`XP_057791875.1`	Pfam	`PF21010`	HA2_C	Domain	824	885	9.6e-12	46.0	Helicase associated domain (HA2), ratchet-like
`XP_057791875.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	943	1019	4.2e-24	85.3	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057791876.1`	Pfam	`PF13401`	AAA_22	Domain	416	542	3.5e-07	31.3	AAA domain
`XP_057791876.1`	Pfam	`PF00271`	Helicase_C	Domain	611	733	2.1e-11	44.8	Helicase conserved C-terminal domain
`XP_057791876.1`	Pfam	`PF04408`	WHD_HA2	Domain	795	823	9e-11	42.3	Helicase associated domain (HA2), winged-helix
`XP_057791876.1`	Pfam	`PF21010`	HA2_C	Domain	824	885	9.5e-12	46.0	Helicase associated domain (HA2), ratchet-like
`XP_057791876.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	943	1019	4.2e-24	85.2	Oligonucleotide/oligosaccharide-binding (OB)-fold

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057935890.1
CAATTTTTATTGAGATTAATCTTGCAATTTTATTTTACTTAAAAAGTTTTAAGGAAAATAAATACTGAGAGAATTTAAACACAGAACGCAAAACTCTGCCCGCCACCGCCGTCGCCGTCGCCCATTCGCAGCCTCATCGAACTCCCCTCCAATTTGCGATTAGTTCAAATGGGTGATTTGAAGACATGGGTCTCTGACAAATTGATGTCCCTTCTGGGATATTCACAGCCCACCGTTGTTCAATATGTGATAACATTGTC...

XM_057935891.1
AATTTTTATTGAGATTAATCTTGCAATTTTATTTTACTTAAAAAGTTTTAAGGAAAATAAATACTGAGAGAATTTAAACACAGAACGCAAAACTCTGCCCGCCACCGCCGTCGCCGTCGCCCATTCGCAGCCTCATCGAACTCCCCTCCAATTTGCGATTAGTGGGCTTGAGCGAGTATTGTTGGGTTATGATGGAGGTGAGCATTGTATAAATCAACAGACGCGCAAAGGTGACCCAGCAGCTGGTGCCGCCCGGCCCG...

CDS

4 records

下载 CDS FASTA

LOC131008829
ATGGGTGATTTGAAGACATGGGTCTCTGACAAATTGATGTCCCTTCTGGGATATTCACAGCCCACCGTTGTTCAATATGTGATAACATTGTCTAAGAAAGCTTCATCTCCCTCTGAGATTGTAAATCAACTGGTGGGCTTGGGAATATCTTCCTCTGCTGAAACAGTCGGGTTCGCCAAAGAAATTTTTGCCAGGGTGGAACACAAGACTTCAGGGCCAAATCAATATCAACAAAAAGAAAGGGAGGCGGCAATGCTTGC...

Protein

4 records

下载 Protein FASTA

XP_057791873.1
MGDLKTWVSDKLMSLLGYSQPTVVQYVITLSKKASSPSEIVNQLVGLGISSSAETVGFAKEIFARVEHKTSGPNQYQQKEREAAMLARKQKTYTLLEDDDDDDDSVHVSPPPKKEEIRKKKFRKRSEPQDDIDDDDEVVPHGGKERQVRRRTVQDEDDGSESEEERLRDQREREELERHIRERDAAGTRKITDQKLSKKEEEEAIRRSDALENDGIQTLRKVSRQEYLKKREQKKLEELRDDIEDEQYLFDGVKLTEKEY...

XP_057791874.1
MGDLKTWVSDKLMSLLGYSQPTVVQYVITLSKKASSPSEIVNQLVGLGISSSAETVGFAKEIFARVEHKTSGPNQYQQKEREAAMLARKQKTYTLLEDDDDDDDSVHVSPPPKKEEIRKKKFRKRSEPQDDIDDDDEVVPHGGKERQVRRRTVQDEDDGSESEEERLRDQREREELERHIRERDAAGTRKITDQKLSKKEEEEAIRRSDALENDGIQTLRKVSRQEYLKKREQKKLEELRDDIEDEQYLFDGVKLTEKEY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器