Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004835`

染色体: Chr02 坐标: 70472605-70475789 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004835`
名称	SmilChr02G004835
描述	ammonium transporter 2 member 5-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70472605 - 70475789 / `+`

ID 对照

NCBI Gene ID	`LOC131008830`
GeneID	`131008830`
locus_tag	`-`
NCBI Name	`LOC131008830`
原始查询	`LOC131008830`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ammonium transporter 2 member 5-like
产物	ammonium transporter 2 member 5-like
Arabidopsis	`AT2G38290` (AMT2) ammonium transporter 2 [Source:NCBI gene (formerly Entrezgene);Acc:818409] identity=63; qcov=0.964; evalue=0; confidence=high
Rice	`Os01g0870300` (OsAMT3) - identity=64.5; qcov=0.981; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane); GO:0008519 (ammonium channel activity); GO:0072488 (ammonium transmembrane transport)
KEGG	-
Pfam	PF00909 (Ammonium_transp)
InterPro	-
eggNOG	-
NR	GeneID:131008830

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791877.1`
2	Vesicle	囊泡	0.40000	`XP_057791877.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057791877.1`
4	Nucleus	细胞核	0.00000	`XP_057791877.1`
5	Chromosome	染色体	0.00000	`XP_057791877.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70473748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B126,B55,B77,C23
`Chr2:70473776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:70473941`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr2:70474025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:70474064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B111,B122,C22,C87
`Chr2:70474136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C35,C47
`Chr2:70474139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:70474154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C8
`Chr2:70474319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B67,C11,C69
`Chr2:70474586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr2:70474627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:70474660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,C2,C32,C68,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791877.1

476 aa

238

476

Ammonium_transp

PF00909 Ammonium_transp 28-442 aa

XP_057791878.1

476 aa

238

476

Ammonium_transp

PF00909 Ammonium_transp 28-442 aa

XP_057791879.1

476 aa

238

476

Ammonium_transp

PF00909 Ammonium_transp 28-442 aa

XP_057791880.1

476 aa

238

476

Ammonium_transp

PF00909 Ammonium_transp 28-442 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791877.1`	Pfam	`PF00909`	Ammonium_transp	Family	28	442	2.8e-84	283.9	Ammonium Transporter Family
`XP_057791878.1`	Pfam	`PF00909`	Ammonium_transp	Family	28	442	2.8e-84	283.9	Ammonium Transporter Family
`XP_057791879.1`	Pfam	`PF00909`	Ammonium_transp	Family	28	442	2.8e-84	283.9	Ammonium Transporter Family
`XP_057791880.1`	Pfam	`PF00909`	Ammonium_transp	Family	28	442	2.8e-84	283.9	Ammonium Transporter Family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057935897.1
GCGCCAGCCTCTACTAGAATAATTATATATTGCTGACACGACAAAGATTGCTCTGTATGTTCTCCACAATACAAAATTTGTCTTCTGATTATTTGTACAAGTTAGGTAAGTACTGAAAATGAAATTGAGATAAATATATGTACTTGATAAGTAAAGTTATGACGTTAAAATTTGGTCGGTGCAAACTATGAGTACATGGAAAATAAGAGCCTCGATTCTATTCTCTTCAAGAAAAACAAAAGCTCGATGCTGGACTGGCA...

XM_057935896.1
CTTCTGATTATTTGTACAAGTTAGGTAAGTACTGAAAATGAAATTGAGATAAATATATGTACTTGATAAGTAAAGTTATGACGTTAAAATTTGGTCGGTGCAAACTATGAGTACATGGAAAATAAGAGCCTCGATTCTATTCTCTTCAGTATGTCCTCTTCTCTTCTCTTCTCTTCTCGAAATTAAATATATGCATTTTTGGCACTAATCAGTTTTGTTTGTGGCAGAGAAAAACAAAAGCTCGATGCTGGACTGGCAAA...

CDS

4 records

下载 CDS FASTA

LOC131008830
ATGGCGAACTGGACCGCGCTCCTCCCGGCGAACCTCGTCCCCGACGACGCCAACCCCGAGTGGATGAACAAAGGGGACAACGCTTGGCAACTGACGGCGGCCACCCTCGTCGGCCTGCAAAGCGTGCCTGGGCTGATCATCCTCTACGGCGGCGCTGTGAAGAAGAAGTGGGCCGTGAACTCGGCCTTCATGGCGCTCTACGCCTTCGCCTGCGTGCTCGTGTGCTGGGTTTGCTGGGGCTACCGCCTCTCCTTCGGCGA...

Protein

4 records

下载 Protein FASTA

XP_057791877.1
MANWTALLPANLVPDDANPEWMNKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMALYAFACVLVCWVCWGYRLSFGDQLVPIWGKINVALSQHYLFEKAFTGNFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTIGAYTIWSLNGWLSKAGMIDYSGGYVIHLSSGVAGFTAAYWVGPRLTKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAILNTHVCTAT...

XP_057791878.1
MANWTALLPANLVPDDANPEWMNKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMALYAFACVLVCWVCWGYRLSFGDQLVPIWGKINVALSQHYLFEKAFTGNFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTIGAYTIWSLNGWLSKAGMIDYSGGYVIHLSSGVAGFTAAYWVGPRLTKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAILNTHVCTAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器