当前解析结果
SmilChr02G004866| 统一新 Gene ID | SmilChr02G004866 |
|---|---|
| 名称 | SmilChr02G004866 |
| 描述 | two-component response regulator-like APRR1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70767168 - 70773889 / - |
| NCBI Gene ID | LOC131008861 |
|---|---|
| GeneID | 131008861 |
| locus_tag | - |
| NCBI Name | LOC131008861 |
| 原始查询 | LOC131008861 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | two-component response regulator-like APRR1 |
| 产物 | two-component response regulator-like APRR1 |
| Arabidopsis | AT5G61380 (TOC1)CCT motif -containing response regulator protein [Source:NCBI gene (formerly Entrezgene);Acc:836259] identity=47.6; qcov=1.07; evalue=9.69e-149; confidence=high |
| Rice | Os02g0618200 (OsPRR1)- identity=41.2; qcov=0.938; evalue=1.63e-108; confidence=medium |
| GO | GO:0000160 (phosphorelay signal transduction system); GO:0005515 (protein binding); GO:0009736 (cytokinin-activated signaling pathway) |
| KEGG | smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00072 (Response_reg); PF06203 (CCT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008861 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791939.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791939.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791939.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791939.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791939.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70767820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:70767989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr2:70768246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr2:70768557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B79,C51,D7 |
Chr2:70768569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B33,B95,C14 |
Chr2:70769914 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr2:70769918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr2:70769929 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:70770390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:70770444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr2:70771114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B20,D5 |
Chr2:70772033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791939.1PF00072
Response_reg 21-132 aa
PF06203
CCT 465-507 aa
XP_057791940.1PF00072
Response_reg 21-132 aa
PF06203
CCT 465-507 aa
XP_057791941.1PF00072
Response_reg 26-112 aa
PF06203
CCT 445-487 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791939.1 |
Pfam | PF00072 |
Response_reg | Domain | 21 | 132 | 7.4e-18 | 65.5 | Response regulator receiver domain |
XP_057791939.1 |
Pfam | PF06203 |
CCT | Motif | 465 | 507 | 8.7e-16 | 58.4 | CCT motif |
XP_057791940.1 |
Pfam | PF00072 |
Response_reg | Domain | 21 | 132 | 7.4e-18 | 65.5 | Response regulator receiver domain |
XP_057791940.1 |
Pfam | PF06203 |
CCT | Motif | 465 | 507 | 8.7e-16 | 58.4 | CCT motif |
XP_057791941.1 |
Pfam | PF00072 |
Response_reg | Domain | 26 | 112 | 6.9e-15 | 55.9 | Response regulator receiver domain |
XP_057791941.1 |
Pfam | PF06203 |
CCT | Motif | 445 | 487 | 8.6e-16 | 58.4 | CCT motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。