当前解析结果
SmilChr02G004880| 统一新 Gene ID | SmilChr02G004880 |
|---|---|
| 名称 | SmilChr02G004880 |
| 描述 | plasma membrane ATPase 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70887549 - 70898316 / + |
| NCBI Gene ID | LOC131008878 |
|---|---|
| GeneID | 131008878 |
| locus_tag | - |
| NCBI Name | LOC131008878 |
| 原始查询 | LOC131008878 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plasma membrane ATPase 1 |
| 产物 | plasma membrane ATPase 1 |
| Arabidopsis | AT5G62670 (HA11)H[+]-ATPase 11 [Source:NCBI gene (formerly Entrezgene);Acc:836388] identity=91.5; qcov=0.997; evalue=0; confidence=high |
| Rice | Os12g0638700 (OSA3)- identity=89; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0008553 (P-type proton-exporting transporter activity); GO:0016887 (ATP hydrolysis activity); GO:0051453 (regulation of intracellular pH); GO:0120029 (proton export across plasma membrane) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008878 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057791960.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057791960.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057791960.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057791960.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791960.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70893410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,B36 |
Chr2:70893443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,B16,B36 |
Chr2:70893806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B55,B95,C14,C31,C48 |
Chr2:70894102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B35,B97 |
Chr2:70894138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C47,C49 |
Chr2:70894165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:70894426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:70894633 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B125 |
Chr2:70894633 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B125 |
Chr2:70894681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:70895391 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | A20,B74,C3,C40,C9 |
Chr2:70895391 |
GA |
G |
1bp_deletion | CDS_variant | 5 | A20,B74,C3,C40,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791960.1PF00690
Cation_ATPase_N 21-84 aa
PF00122
E1-E2_ATPase 133-232 aa
PF00702
Hydrolase 328-605 aa
PF13246
Cation_ATPase 376-496 aa
XP_057791961.1PF00690
Cation_ATPase_N 21-84 aa
PF00122
E1-E2_ATPase 133-232 aa
PF00702
Hydrolase 328-605 aa
PF13246
Cation_ATPase 376-496 aa
XP_057791962.1PF00690
Cation_ATPase_N 21-84 aa
PF00122
E1-E2_ATPase 133-232 aa
PF00702
Hydrolase 328-605 aa
PF13246
Cation_ATPase 376-496 aa
XP_057791963.1PF00690
Cation_ATPase_N 21-84 aa
PF00122
E1-E2_ATPase 133-232 aa
PF00702
Hydrolase 328-605 aa
PF13246
Cation_ATPase 376-496 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791960.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 21 | 84 | 6.6e-15 | 55.2 | Cation transporter/ATPase, N-terminus |
XP_057791960.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 133 | 232 | 4.1e-32 | 110.7 | P-type ATPase actuator domain |
XP_057791960.1 |
Pfam | PF00702 |
Hydrolase | Domain | 328 | 605 | 4e-14 | 54.2 | haloacid dehalogenase-like hydrolase |
XP_057791960.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 376 | 496 | 1.4e-06 | 29.0 | P-type ATPase, cytoplasmic domain N |
XP_057791961.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 21 | 84 | 6.6e-15 | 55.2 | Cation transporter/ATPase, N-terminus |
XP_057791961.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 133 | 232 | 4.1e-32 | 110.7 | P-type ATPase actuator domain |
XP_057791961.1 |
Pfam | PF00702 |
Hydrolase | Domain | 328 | 605 | 4e-14 | 54.2 | haloacid dehalogenase-like hydrolase |
XP_057791961.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 376 | 496 | 1.4e-06 | 29.0 | P-type ATPase, cytoplasmic domain N |
XP_057791962.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 21 | 84 | 6.6e-15 | 55.2 | Cation transporter/ATPase, N-terminus |
XP_057791962.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 133 | 232 | 4.1e-32 | 110.7 | P-type ATPase actuator domain |
XP_057791962.1 |
Pfam | PF00702 |
Hydrolase | Domain | 328 | 605 | 4e-14 | 54.2 | haloacid dehalogenase-like hydrolase |
XP_057791962.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 376 | 496 | 1.4e-06 | 29.0 | P-type ATPase, cytoplasmic domain N |
XP_057791963.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 21 | 84 | 6.6e-15 | 55.2 | Cation transporter/ATPase, N-terminus |
XP_057791963.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 133 | 232 | 4.1e-32 | 110.7 | P-type ATPase actuator domain |
XP_057791963.1 |
Pfam | PF00702 |
Hydrolase | Domain | 328 | 605 | 4e-14 | 54.2 | haloacid dehalogenase-like hydrolase |
XP_057791963.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 376 | 496 | 1.4e-06 | 29.0 | P-type ATPase, cytoplasmic domain N |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。