当前解析结果
SmilChr02G005028| 统一新 Gene ID | SmilChr02G005028 |
|---|---|
| 名称 | SmilChr02G005028 |
| 描述 | uncharacterized SmilChr02G005028 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72019654 - 72023823 / + |
| NCBI Gene ID | LOC131008918 |
|---|---|
| GeneID | 131008918 |
| locus_tag | - |
| NCBI Name | LOC131008918 |
| 原始查询 | LOC131008918 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING/U-box protein [Source:NCBI gene (formerly Entrezgene);Acc:819734]; symbol=AT3G05670; hit=AT3G05670; species=arabidopsis; confidence=low |
| 产物 | RING/U-box protein [Source:NCBI gene (formerly Entrezgene);Acc:819734]; symbol=AT3G05670; hit=AT3G05670; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G05670 (AT3G05670)RING/U-box protein [Source:NCBI gene (formerly Entrezgene);Acc:819734] identity=55.7; qcov=0.421; evalue=3.71e-104; confidence=low |
| Rice | Os03g0302200 (OsRFP)- identity=50.2; qcov=0.37; evalue=1.07e-74; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00628 (PHD); PF13639 (zf-RING_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008918 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792018.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057792018.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792018.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792018.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792018.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72020573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:72020709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:72020736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C4,C63,C7,C77,C79 |
Chr2:72020773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72020900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B50,C26,D8 |
Chr2:72020929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B127,B59,B6,C80 |
Chr2:72020960 |
A |
AGG |
2bp_insertion | frameshift_variant | 1 | B85 |
Chr2:72020960 |
A |
AGG |
2bp_insertion | CDS_variant | 1 | B85 |
Chr2:72021266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B64,C35 |
Chr2:72021385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B25 |
Chr2:72021729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C24,C38,C51 |
Chr2:72022388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792018.1PF13639
zf-RING_2 368-411 aa
PF00628
PHD 462-505 aa
XP_057792019.1PF13639
zf-RING_2 368-411 aa
PF00628
PHD 462-505 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792018.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 368 | 411 | 4.1e-07 | 30.9 | Ring finger domain |
XP_057792018.1 |
Pfam | PF00628 |
PHD | Domain | 462 | 505 | 7.1e-07 | 29.9 | PHD-finger |
XP_057792019.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 368 | 411 | 4e-07 | 30.9 | Ring finger domain |
XP_057792019.1 |
Pfam | PF00628 |
PHD | Domain | 462 | 505 | 6.9e-07 | 29.9 | PHD-finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。