当前解析结果
SmilChr02G005001| 统一新 Gene ID | SmilChr02G005001 |
|---|---|
| 名称 | SmilChr02G005001 |
| 描述 | glutamate--tRNA ligase, cytoplasmic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71816167 - 71819794 / - |
| NCBI Gene ID | LOC131008920 |
|---|---|
| GeneID | 131008920 |
| locus_tag | - |
| NCBI Name | LOC131008920 |
| 原始查询 | LOC131008920 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate--tRNA ligase, cytoplasmic |
| 产物 | glutamate--tRNA ligase%2C cytoplasmic |
| Arabidopsis | AT5G26710 (AT5G26710)Glutamyl/glutaminyl-tRNA synthetase, class Ic [Source:NCBI gene (formerly Entrezgene);Acc:832718] identity=69.2; qcov=0.993; evalue=0; confidence=high |
| Rice | Os01g0271200- identity=69; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0004818 (glutamate-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006412 (translation); GO:0006424 (glutamyl-tRNA aminoacylation); GO:0017102 (methionyl glutamyl tRNA synthetase complex) |
| KEGG | smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00749 (tRNA-synt_1c); PF03950 (tRNA-synt_1c_C); PF20974 (tRNA-synt_1c_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008920 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057792021.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057792021.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057792021.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792021.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792021.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71816444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr2:71816770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:71816894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,B62 |
Chr2:71816942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,B62 |
Chr2:71817085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr2:71817774 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,D6 |
Chr2:71818248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,C35,C45 |
Chr2:71818319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr2:71818772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,D6 |
Chr2:71818784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr2:71819003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,C57,C75,C79 |
Chr2:71819459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792021.1PF00749
tRNA-synt_1c 217-521 aa
PF03950
tRNA-synt_1c_C 524-613 aa
PF20974
tRNA-synt_1c_C2 628-701 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792021.1 |
Pfam | PF00749 |
tRNA-synt_1c | Domain | 217 | 521 | 2.6e-104 | 349.2 | tRNA synthetases class I (E and Q), catalytic domain |
XP_057792021.1 |
Pfam | PF03950 |
tRNA-synt_1c_C | Domain | 524 | 613 | 1.4e-14 | 54.8 | tRNA synthetases class I (E and Q), anti-codon binding domain |
XP_057792021.1 |
Pfam | PF20974 |
tRNA-synt_1c_C2 | Domain | 628 | 701 | 4.8e-14 | 53.6 | tRNA synthetases class I (E and Q), anti-codon binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。