Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004912`

染色体: Chr02 坐标: 71120084-71122722 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004912`
名称	SmilChr02G004912
描述	putative pentatricopeptide repeat-containing protein At3g05240
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71120084 - 71122722 / `+`

ID 对照

NCBI Gene ID	`LOC131008924`
GeneID	`131008924`
locus_tag	`-`
NCBI Name	`LOC131008924`
原始查询	`LOC131008924`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At3g05240
产物	putative pentatricopeptide repeat-containing protein At3g05240
Arabidopsis	`AT4G18750` (DOT4) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827609] identity=32.4; qcov=0.943; evalue=3.67e-101; confidence=low
Rice	`Os01g0715900` - identity=34.8; qcov=0.79; evalue=1.03e-102; confidence=low
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF17177 (PPR_long)
InterPro	-
eggNOG	-
NR	GeneID:131008924

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057792027.1`
2	Nucleus	细胞核	0.00000	`XP_057792027.1`
3	Chromosome	染色体	0.00000	`XP_057792027.1`
4	Centromere	着丝粒	0.00000	`XP_057792027.1`
5	Chromatin	染色质	0.00000	`XP_057792027.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71120336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:71120338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:71120543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr2:71120598`	`G`	`GC`	1bp_insertion	frameshift_variant	10	B1,B108,B34,B64,C1,C23,C42,C5,C78,D3
`Chr2:71120961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:71121105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C30,C47,C77
`Chr2:71121113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:71121140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C30,C33,C77
`Chr2:71121149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,B20
`Chr2:71121153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C36
`Chr2:71121220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C36
`Chr2:71121224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792027.1

670 aa

335

670

PPR_2

PPR

PPR_2

PPR

PPR_long

PPR

PF13041 PPR_2 177-229 aa PF01535 PPR 180-209 aa PF01535 PPR 255-283 aa PF13041 PPR_2 283-330 aa PF01535 PPR 285-315 aa PF17177 PPR_long 296-437 aa PF01535 PPR 358-383 aa PF01535 PPR 388-416 aa PF01535 PPR 460-486 aa PF01535 PPR 488-515 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792027.1`	Pfam	`PF13041`	PPR_2	Repeat	177	229	5.4e-53	177.6	PPR repeat family
`XP_057792027.1`	Pfam	`PF01535`	PPR	Repeat	180	209	1.3e-46	154.3	PPR repeat
`XP_057792027.1`	Pfam	`PF01535`	PPR	Repeat	255	283	1.3e-46	154.3	PPR repeat
`XP_057792027.1`	Pfam	`PF13041`	PPR_2	Repeat	283	330	5.4e-53	177.6	PPR repeat family
`XP_057792027.1`	Pfam	`PF01535`	PPR	Repeat	285	315	1.3e-46	154.3	PPR repeat
`XP_057792027.1`	Pfam	`PF17177`	PPR_long	Repeat	296	437	1.7e-10	41.4	Pentacotripeptide-repeat region of PRORP
`XP_057792027.1`	Pfam	`PF01535`	PPR	Repeat	358	383	1.3e-46	154.3	PPR repeat
`XP_057792027.1`	Pfam	`PF01535`	PPR	Repeat	388	416	1.3e-46	154.3	PPR repeat
`XP_057792027.1`	Pfam	`PF01535`	PPR	Repeat	460	486	1.3e-46	154.3	PPR repeat
`XP_057792027.1`	Pfam	`PF01535`	PPR	Repeat	488	515	1.3e-46	154.3	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936044.1
AAAAATAAATTTTCGAGTGGAACTTCTCGTGAAATAAGAAAAACTTCGAATTCATTATTATGCTCTAAAAAAAACATTAAAATCATGACAATTTATTGCACGCTTCACAGAGATCGACCAACTATGCAGAAACAATGTTCTGTTTCACAGTTCTAAACTTGCGATTCAACATATAATTTTCAATCAAACCCCAAATTTCATGAATTATCCTCCCCAAATTCGATTAGCTCGATTGCTTCTTCAAGAAAAAACCTCCAATC...

CDS

1 records

下载 CDS FASTA

LOC131008924
ATGAATTATCCTCCCCAAATTCGATTAGCTCGATTGCTTCTTCAAGAAAAAACCTCCAATCTCCTTTCCCCTCTGCAGCTCTTCCAACTCCACTCTCTAGCAATCACCACAGGCCTCCAATTCCAGCACCCCTCAGTTCTCCTCTCTCTCTTCAAGCTCTCTCTCTCTAACCCCTCGACGCTCACACACGCAGACAAACTCTTCCCACGAGTTCAAGAGCCCTACAAATGGAATCTCATGATCAGACACGCATCAGCTAC...

Protein

1 records

下载 Protein FASTA

XP_057792027.1
MNYPPQIRLARLLLQEKTSNLLSPLQLFQLHSLAITTGLQFQHPSVLLSLFKLSLSNPSTLTHADKLFPRVQEPYKWNLMIRHASATSPLKALSLFQEMRSDTSSAPFYNDPFVYASLVKACGKARGFLQGKSVHCRVIKLGLGYNANVLNSLVSFYLGSVNLMSYAAVLFDSVSEKNVVIVNGLISGNVRRGNFDLGLKLFVEMLRRCFGSNVKPNCVTFVILISGCVEFGGFATGKALHCCSWKMGFGWNVEMCNALI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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