当前解析结果
SmilChr02G005039| 统一新 Gene ID | SmilChr02G005039 |
|---|---|
| 名称 | SmilChr02G005039 |
| 描述 | ATP-dependent DNA helicase Q-like 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72084279 - 72090658 / + |
| NCBI Gene ID | LOC131008933 |
|---|---|
| GeneID | 131008933 |
| locus_tag | - |
| NCBI Name | LOC131008933 |
| 原始查询 | LOC131008933 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent DNA helicase Q-like 1 |
| 产物 | ATP-dependent DNA helicase Q-like 1 |
| Arabidopsis | AT3G05740 (RECQI1)RECQ helicase l1 [Source:NCBI gene (formerly Entrezgene);Acc:819743] identity=64.9; qcov=1; evalue=0; confidence=high |
| Rice | Os11g0672700 (OsRecQ1)- identity=59.5; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0000724 (double-strand break repair via homologous recombination); GO:0003676 (nucleic acid binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005694 (chromosome); GO:0005737 (cytoplasm); GO:0006268 (GO:0006268); GO:0009378 (four-way junction helicase activity); GO:0043138 (3'-5' DNA helicase activity) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF16124 (RecQ_Zn_bind); PF28551 (UBA_RECQL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008933 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792037.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792037.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792037.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792037.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792037.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72085205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C54,C74 |
Chr2:72085309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:72085826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72085991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:72087597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,D1 |
Chr2:72088308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:72088361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,D11 |
Chr2:72088412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,D11 |
Chr2:72088466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B94 |
Chr2:72088485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr2:72088490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,C57,C7,C75 |
Chr2:72088570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C54,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792037.1PF28551
UBA_RECQL1 1-60 aa
PF00270
DEAD 225-393 aa
PF00271
Helicase_C 433-539 aa
PF16124
RecQ_Zn_bind 551-621 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792037.1 |
Pfam | PF28551 |
UBA_RECQL1 | Domain | 1 | 60 | 2e-32 | 111.9 | ATP-dependent DNA helicase Q-like 1, UBA domain |
XP_057792037.1 |
Pfam | PF00270 |
DEAD | Domain | 225 | 393 | 5.7e-23 | 82.2 | DEAD/DEAH box helicase |
XP_057792037.1 |
Pfam | PF00271 |
Helicase_C | Domain | 433 | 539 | 4.9e-19 | 69.3 | Helicase conserved C-terminal domain |
XP_057792037.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 551 | 621 | 7.5e-14 | 52.9 | RecQ zinc-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。