Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004968`

染色体: Chr02 坐标: 71584588-71591206 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004968`
名称	SmilChr02G004968
描述	uncharacterized SmilChr02G004968
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71584588 - 71591206 / `+`

ID 对照

NCBI Gene ID	`LOC131008938`
GeneID	`131008938`
locus_tag	`-`
NCBI Name	`LOC131008938`
原始查询	`LOC131008938`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-binding bromodomain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842169]; symbol=AT1G58025; hit=AT1G58025; species=arabidopsis; confidence=medium
产物	DNA-binding bromodomain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842169]; symbol=AT1G58025; hit=AT1G58025; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G58025` (AT1G58025) DNA-binding bromodomain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842169] identity=43.9; qcov=0.65; evalue=7.01e-71; confidence=medium
Rice	`Os08g0109500` - identity=34.2; qcov=0.925; evalue=2.02e-67; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00439 (Bromodomain)
InterPro	-
eggNOG	-
NR	GeneID:131008938

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792041.1`
2	Nucleoplasm	核质	0.20000	`XP_057792041.1`
3	Chromosome	染色体	0.00000	`XP_057792041.1`
4	Centromere	着丝粒	0.00000	`XP_057792041.1`
5	Chromatin	染色质	0.00000	`XP_057792041.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71585030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,C18
`Chr2:71585562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B35,B67,C5
`Chr2:71586410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr2:71588615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr2:71589944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B11,C28,C35,C6
`Chr2:71590035`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B57
`Chr2:71590035`	`GA`	`G`	1bp_deletion	CDS_variant	1	B57
`Chr2:71590176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:71590792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:71590873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:71590980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792041.1

575 aa

288

575

Bromodomain

PF00439 Bromodomain 206-288 aa

XP_057792043.1

575 aa

288

575

Bromodomain

PF00439 Bromodomain 206-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792041.1`	Pfam	`PF00439`	Bromodomain	Domain	206	288	1.9e-16	60.5	Bromodomain
`XP_057792043.1`	Pfam	`PF00439`	Bromodomain	Domain	206	288	1.9e-16	60.5	Bromodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936058.1
AATACTCCTCCAAGAACCCTTGTTCAATTTCCGACGCCCAAAAGAGAGGGAAAAACAAAAAAAATTAAAATTCCGTGACCCAATAGAGGCATCGGAGCCTAGAGAGAGAGAGAGAGAAAAAAAAAGGGGAGTTAAGAGGGGCGAAGCTTCATCGTCTCCGGCGAGAATTTGGGCGTAAGGAGAGAGAGAAGGAAAAGAAGAATTTGATCCAAATCCGTTAAGGGCTCTGCAGTCAGCGTCACGACAAAAGCCCCCTTTCT...

XM_057936060.1
CAATTTCCGACGCCCAAAAGAGAGGGAAAAACAAAAAAAATTAAAATTCCGTGACCCAATAGAGGCATCGGAGCCTAGAGAGAGAGAGAGAGAAAAAAAAAGGGGAGTTAAGAGGGGCGAAGCTTCATCGTCTCCGGCGAGAATTTGGGCGTAAGGAGAGAGAGAAGGAAAAGAAGAATTTGATCCAAATCCGTTAAGGGCTCTGCAGTCAGCGTCACGACAAAAGCCCCCTTTCTTTTGATTACTAGAGGGGTAGAAGA...

CDS

2 records

下载 CDS FASTA

LOC131008938
ATGAAGCGAAGGCGTGGAAGCAAGAAAGGAAGAGCAAAGATGCCGAAGTTGGCTAGCACAGACGAAGCGGCACCAACTGCTACAGAGGATAATTCTGGTGCGGATGAGTTTGAGAATGAAGATGTTGACTCTGGAATGGATGCTGAGACTGAGAGGACGCCTTCTCCTCCAAGAGCGTCTCAACCTGAAACTCTTGCTATTGCTAATTCTGATACTATAGGTCGACCAAATAGTAGTAATATTTTTGGGAAAGCAGTGTA...

Protein

2 records

下载 Protein FASTA

XP_057792041.1
MKRRRGSKKGRAKMPKLASTDEAAPTATEDNSGADEFENEDVDSGMDAETERTPSPPRASQPETLAIANSDTIGRPNSSNIFGKAVYTRVKVKIKTSKTLLTSSDAPSQSDTDKSSHQLGSEKQLPSEKMEDSANSLSETNGGISGNTTLKPTGVKIKSSRGLGSSSMSPCSNSEPLKGDRVEKKDTKSLHNESKNNEQELRTALEVIRKIMKMDAAEPFNVPVNPVALGIPDYFDVITTPMDFGTICSNLEKGVKYKNS...

XP_057792043.1
MKRRRGSKKGRAKMPKLASTDEAAPTATEDNSGADEFENEDVDSGMDAETERTPSPPRASQPETLAIANSDTIGRPNSSNIFGKAVYTRVKVKIKTSKTLLTSSDAPSQSDTDKSSHQLGSEKQLPSEKMEDSANSLSETNGGISGNTTLKPTGVKIKSSRGLGSSSMSPCSNSEPLKGDRVEKKDTKSLHNESKNNEQELRTALEVIRKIMKMDAAEPFNVPVNPVALGIPDYFDVITTPMDFGTICSNLEKGVKYKNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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