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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005019

染色体: Chr02 坐标: 71961577-71965484 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005019
名称SmilChr02G005019
描述uncharacterized SmilChr02G005019
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向71961577 - 71965484 / +

ID 对照

NCBI Gene IDLOC131008941
GeneID131008941
locus_tag-
NCBI NameLOC131008941
原始查询LOC131008941

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述HIT zinc finger and PAPA-1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842099]; symbol=AT1G56460; hit=AT1G56460; species=arabidopsis; confidence=medium
产物HIT zinc finger and PAPA-1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842099]; symbol=AT1G56460; hit=AT1G56460; species=arabidopsis; confidence=medium
ArabidopsisAT1G56460 (AT1G56460)
HIT zinc finger and PAPA-1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842099]
identity=38.6; qcov=1.01; evalue=2.49e-79; confidence=medium
RiceOs12g0561200
-
identity=57.4; qcov=0.378; evalue=3.29e-69; confidence=low
GOGO:0006338 (chromatin remodeling); GO:0031011 (Ino80 complex)
KEGG-
PfamPF04438 (zf-HIT); PF04795 (PAPA-1)
InterPro-
eggNOG-
NRGeneID:131008941

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057792046.1
2 Chromosome 染色体 0.00000 XP_057792046.1
3 Centromere 着丝粒 0.00000 XP_057792046.1
4 Chromatin 染色质 0.00000 XP_057792046.1
5 Telomere 端粒 0.00000 XP_057792046.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:71963034 G A EMS_canonical_SNV CDS_variant 4 B107,B110,B130,B138
Chr2:71963065 G A EMS_canonical_SNV CDS_variant 2 B37,C55
Chr2:71963209 G A EMS_canonical_SNV CDS_variant 2 B70,C82
Chr2:71963254 G A EMS_canonical_SNV CDS_variant 1 B33
Chr2:71963283 G A EMS_canonical_SNV CDS_variant 4 B126,B77,C34,C87
Chr2:71963325 C T EMS_canonical_SNV CDS_variant 1 C48
Chr2:71963366 C T EMS_canonical_SNV CDS_variant 2 B62,C39
Chr2:71963396 C T EMS_canonical_SNV CDS_variant 1 C48
Chr2:71963917 C T EMS_canonical_SNV CDS_variant 1 B138
Chr2:71963937 C T EMS_canonical_SNV CDS_variant 4 B135,B66,B71,C62
Chr2:71963952 G A EMS_canonical_SNV CDS_variant 4 B135,B66,B71,C62
Chr2:71963960 C T EMS_canonical_SNV CDS_variant 4 B135,B66,B71,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792046.1
558 aa
N
1
279
558
PAPA-1
zf-HIT
C
PF04795 PAPA-1 414-498 aa PF04438 zf-HIT 515-546 aa
XP_057792047.1
558 aa
N
1
279
558
PAPA-1
zf-HIT
C
PF04795 PAPA-1 414-498 aa PF04438 zf-HIT 515-546 aa
XP_057792048.1
558 aa
N
1
279
558
PAPA-1
zf-HIT
C
PF04795 PAPA-1 414-498 aa PF04438 zf-HIT 515-546 aa
XP_057792049.1
558 aa
N
1
279
558
PAPA-1
zf-HIT
C
PF04795 PAPA-1 414-498 aa PF04438 zf-HIT 515-546 aa
XP_057792050.1
558 aa
N
1
279
558
PAPA-1
zf-HIT
C
PF04795 PAPA-1 414-498 aa PF04438 zf-HIT 515-546 aa
XP_057792051.1
558 aa
N
1
279
558
PAPA-1
zf-HIT
C
PF04795 PAPA-1 414-498 aa PF04438 zf-HIT 515-546 aa
XP_057792052.1
558 aa
N
1
279
558
PAPA-1
zf-HIT
C
PF04795 PAPA-1 414-498 aa PF04438 zf-HIT 515-546 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792046.1 Pfam PF04795 PAPA-1 Family 414 498 2e-21 77.3 PAPA-1-like conserved region
XP_057792046.1 Pfam PF04438 zf-HIT Domain 515 546 1.2e-06 28.9 HIT zinc finger
XP_057792047.1 Pfam PF04795 PAPA-1 Family 414 498 2e-21 77.3 PAPA-1-like conserved region
XP_057792047.1 Pfam PF04438 zf-HIT Domain 515 546 1.2e-06 28.9 HIT zinc finger
XP_057792048.1 Pfam PF04795 PAPA-1 Family 414 498 2e-21 77.3 PAPA-1-like conserved region
XP_057792048.1 Pfam PF04438 zf-HIT Domain 515 546 1.2e-06 28.9 HIT zinc finger
XP_057792049.1 Pfam PF04795 PAPA-1 Family 414 498 2e-21 77.3 PAPA-1-like conserved region
XP_057792049.1 Pfam PF04438 zf-HIT Domain 515 546 1.2e-06 28.9 HIT zinc finger
XP_057792050.1 Pfam PF04795 PAPA-1 Family 414 498 2e-21 77.3 PAPA-1-like conserved region
XP_057792050.1 Pfam PF04438 zf-HIT Domain 515 546 1.2e-06 28.9 HIT zinc finger
XP_057792051.1 Pfam PF04795 PAPA-1 Family 414 498 2e-21 77.3 PAPA-1-like conserved region
XP_057792051.1 Pfam PF04438 zf-HIT Domain 515 546 1.2e-06 28.9 HIT zinc finger
XP_057792052.1 Pfam PF04795 PAPA-1 Family 414 498 2e-21 77.3 PAPA-1-like conserved region
XP_057792052.1 Pfam PF04438 zf-HIT Domain 515 546 1.2e-06 28.9 HIT zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057936069.1
AAAAAGTTAAACAAAATGCACACAATTTTTATTAGATTCGTAAAAAATAAAAATACATATTGCAAAAGAAGTTAATAAAGCATGAGTTGAAAATGAATAGTCGTGTGAAACTTCGCAGCGGGATTTGAATGACAAACAGCAACTTTACTTTTGTTTGCTTCCAAACTTCAATTTTTTTTTTTTTTTGGTGAAATAACAAATCACTACCGAGTTGAGCCATCAGTCATCAGTCATCACTAATCGCTTCTTCTTTCCAATTA...
XM_057936065.1
GAAAATGAATAGTCGTGTGAAACTTCGCAGCGGGATTTGAATGACAAACAGCAACTTTACTTTTGTTTGCTTCCAAACTTCAATTTTTTTTTTTTTTTGGTGAAATAACAAATCACTACCGAGTTGAGCCATCAGTCATCAGTCATCACTAATCGCTTCTTCTTTCCAATTATTTCTTGATGCTGCTATTGGAAATCTAGCTGATTGTTTTCAGATGGAGGGAATGCTACGCGCTTGCTTTGGGAGAACTTATGGAAATT...

CDS

7 records

下载 CDS FASTA
LOC131008941
ATGGATACCCATGGAGACTCTGGGAGTAATACAACACGCAAACCTTCGAGGAAAAGGAGGAGTAATTTGATACGTCGTCCTTTGAATGAATCCGAATCTCCCCAAGAAAATAGAGATTCCATCTCATTATCATCAACTCCATCAGACCACGTGAGTGATGCACCAAGTGTGGGCAAGGAGTCCTTAACACCATCACTAAACCTTGGTGATGCTATAACCGTGCATAGGAGTTATGACGAAGGTGACACATTGGATGAATC...
LOC131008941
ATGGATACCCATGGAGACTCTGGGAGTAATACAACACGCAAACCTTCGAGGAAAAGGAGGAGTAATTTGATACGTCGTCCTTTGAATGAATCCGAATCTCCCCAAGAAAATAGAGATTCCATCTCATTATCATCAACTCCATCAGACCACGTGAGTGATGCACCAAGTGTGGGCAAGGAGTCCTTAACACCATCACTAAACCTTGGTGATGCTATAACCGTGCATAGGAGTTATGACGAAGGTGACACATTGGATGAATC...

Protein

7 records

下载 Protein FASTA
XP_057792046.1
MDTHGDSGSNTTRKPSRKRRSNLIRRPLNESESPQENRDSISLSSTPSDHVSDAPSVGKESLTPSLNLGDAITVHRSYDEGDTLDESTNLRSSFEDNPAAASWKSQQMKDNKMSEQAIGDYHSEPLGTASDGTGNKVNKVKLKVGGVTHTIHTRSSSGSSSIAGTFAAKSSSDANYPLPKANRQENLNLHDINEKANLKLRGVPWKDFSRTGFAFGKVDSFGADIPEESVKQAVKHDRPSKNKSMIKKYSDDEVYDEDDD...
XP_057792047.1
MDTHGDSGSNTTRKPSRKRRSNLIRRPLNESESPQENRDSISLSSTPSDHVSDAPSVGKESLTPSLNLGDAITVHRSYDEGDTLDESTNLRSSFEDNPAAASWKSQQMKDNKMSEQAIGDYHSEPLGTASDGTGNKVNKVKLKVGGVTHTIHTRSSSGSSSIAGTFAAKSSSDANYPLPKANRQENLNLHDINEKANLKLRGVPWKDFSRTGFAFGKVDSFGADIPEESVKQAVKHDRPSKNKSMIKKYSDDEVYDEDDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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