当前解析结果
SmilChr02G005005| 统一新 Gene ID | SmilChr02G005005 |
|---|---|
| 名称 | SmilChr02G005005 |
| 描述 | intermediate cleaving peptidase 55, mitochondrial |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71842290 - 71851816 / - |
| NCBI Gene ID | LOC131008951 |
|---|---|
| GeneID | 131008951 |
| locus_tag | - |
| NCBI Name | LOC131008951 |
| 原始查询 | LOC131008951 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | intermediate cleaving peptidase 55, mitochondrial |
| 产物 | intermediate cleaving peptidase 55%2C mitochondrial |
| Arabidopsis | AT1G09300 (AT1G09300)Metallopeptidase M24 family protein [Source:NCBI gene (formerly Entrezgene);Acc:837451] identity=68.5; qcov=0.967; evalue=0; confidence=high |
| Rice | Os12g0563500- identity=63.7; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0005739 (mitochondrion); GO:0030145 (manganese ion binding); GO:0070006 (metalloaminopeptidase activity) |
| KEGG | - |
| Pfam | PF00557 (Peptidase_M24); PF05195 (AMP_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008951 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057792079.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.40000 | XP_057792079.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792079.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792079.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792079.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71842728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr2:71845341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B55,C23,D1 |
Chr2:71846116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:71846136 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C14 |
Chr2:71846136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:71847215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,C45 |
Chr2:71847265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,A9 |
Chr2:71847267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr2:71847722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B129,B64,C22,C5 |
Chr2:71848784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:71849625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C57 |
Chr2:71850802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792079.1PF05195
AMP_N 59-170 aa
PF00557
Peptidase_M24 221-444 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792079.1 |
Pfam | PF05195 |
AMP_N | Domain | 59 | 170 | 1.1e-31 | 109.8 | Aminopeptidase P, N-terminal domain |
XP_057792079.1 |
Pfam | PF00557 |
Peptidase_M24 | Domain | 221 | 444 | 9.9e-54 | 183.0 | Metallopeptidase family M24 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。