当前解析结果
SmilChr02G005000| 统一新 Gene ID | SmilChr02G005000 |
|---|---|
| 名称 | SmilChr02G005000 |
| 描述 | UDP-glycosyltransferase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71814202 - 71816017 / + |
| NCBI Gene ID | LOC131008953 |
|---|---|
| GeneID | 131008953 |
| locus_tag | - |
| NCBI Name | LOC131008953 |
| 原始查询 | LOC131008953 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 1-like |
| 产物 | UDP-glycosyltransferase 1-like |
| Arabidopsis | AT2G36770 (AT2G36770)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818249] identity=42.9; qcov=1.02; evalue=1.86e-140; confidence=medium |
| Rice | Os01g0176200- identity=41.5; qcov=1.01; evalue=7.7e-126; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008953 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057792081.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057792081.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792081.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792081.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792081.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71814427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr2:71814451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:71814553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B30,C15,C49 |
Chr2:71814583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C4 |
Chr2:71814589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B73,C36,C60,C9 |
Chr2:71814682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr2:71814755 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B55,C23 |
Chr2:71814785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B109,B44 |
Chr2:71814884 |
GTC |
G |
2bp_deletion | frameshift_variant | 3 | B69,B73,D6 |
Chr2:71814884 |
GTC |
G |
2bp_deletion | CDS_variant | 3 | B69,B73,D6 |
Chr2:71814926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B110,C28 |
Chr2:71815047 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B101 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792081.1PF26168
Glyco_transf_N 7-235 aa
PF00201
UDPGT 265-378 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792081.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 7 | 235 | 4e-11 | 44.0 | Glycosyltransferase, N-terminal domain |
XP_057792081.1 |
Pfam | PF00201 |
UDPGT | Family | 265 | 378 | 1.5e-18 | 67.7 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。