Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005013`

染色体: Chr02 坐标: 71921805-71930282 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005013`
名称	SmilChr02G005013
描述	uncharacterized SmilChr02G005013
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71921805 - 71930282 / `-`

ID 对照

NCBI Gene ID	`LOC131008954`
GeneID	`131008954`
locus_tag	`-`
NCBI Name	`LOC131008954`
原始查询	`LOC131008954`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842097]; symbol=TPR5; hit=AT1G56440; species=arabidopsis; confidence=high
产物	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842097]; symbol=TPR5; hit=AT1G56440; species=arabidopsis; confidence=high
Arabidopsis	`AT1G56440` (TPR5) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842097] identity=46.1; qcov=1.08; evalue=4.24e-143; confidence=high
Rice	`Os05g0129900` - identity=46.8; qcov=0.774; evalue=7.24e-101; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF13877 (RPAP3_C)
InterPro	-
eggNOG	-
NR	GeneID:131008954

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057792082.1`
2	Peroxisome	过氧化物酶体	0.40000	`XP_057792082.1`
3	Cytoplasm	细胞质	0.20000	`XP_057792082.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057792082.1`
5	Trans-golgi network	Trans-golgi network	0.20000	`XP_057792082.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71922121`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	A10,B108,B137,B65,B78,B93,C14,C2,C32
`Chr2:71922139`	`G`	`GGA`	2bp_insertion	frameshift_variant	3	B108,B137,C2
`Chr2:71922139`	`G`	`GGA`	2bp_insertion	CDS_variant	3	B108,B137,C2
`Chr2:71922147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:71923002`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:71923003`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B75,C31,C75,C77,D6
`Chr2:71923205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B37,B74,C87
`Chr2:71923250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:71924212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr2:71924218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:71928889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr2:71929074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B41,B8,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792082.1

470 aa

235

470

RPAP3_C

PF13877 RPAP3_C 348-437 aa

XP_057792083.1

469 aa

234

469

RPAP3_C

PF13877 RPAP3_C 347-436 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792082.1`	Pfam	`PF13877`	RPAP3_C	Domain	348	437	5.6e-24	85.2	Potential Monad-binding region of RPAP3
`XP_057792083.1`	Pfam	`PF13877`	RPAP3_C	Domain	347	436	5.6e-24	85.2	Potential Monad-binding region of RPAP3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936100.1
TTTCGGTCTAATAGACTAATTCGATTTGCGAAATAAATAAATTGATGTGCCTAAAGTCGCTGAAATAGCGCTTTTATGAAGAAGCAAGCATAATCGTTAGTTTGGTGTATTGGAACTCCTACGAAACCTCTGGAGACTGGAGTCACTGAAACTCAACCAAAGCTAAAACCACAGCAAAAACTCGCCAATCCCAATTCCAAACTGCAATGGCGAAAGCCCCCTCCAAGCATTCTCGCGATCAGCCTCTGGACGTCGAGGGG...

XM_057936099.1
AGCGCTTTTATGAAGAAGCAAGCATAATCGTTAGTTTGGTGTATTGGAACTCCTACGAAACCTCTGGAGACTGGAGTCACTGAAACTCAACCAAAGCTAAAACCACAGCAAAAACTCGCCAATCCCAATTCCAAACTGCAATGGCGAAAGCCCCCTCCAAGCATTCTCGCGATCAGCCTCTGCAGGACGTCGAGGGGCTTTTGAATAACTTACAGGACTGGGAATTGTCCTTCAAGGAGAAAGACAAAAAACTGAGAGTA...

CDS

2 records

下载 CDS FASTA

LOC131008954
ATGGCGAAAGCCCCCTCCAAGCATTCTCGCGATCAGCCTCTGGACGTCGAGGGGCTTTTGAATAACTTACAGGACTGGGAATTGTCCTTCAAGGAGAAAGACAAAAAACTGAGAGTAGATGCTTTTGGAAAGGGAAAATTGGATCCCGTTCCTCCAAGTCAAGCAAGTCATAATATTTCTAGTCGACTTTCTGATAACCCTAGAGTTAACGGAAGACAGACAAGGGAAAAGACTTCTTCTTTTGACAATAAGGATACTAT...

LOC131008954
ATGGCGAAAGCCCCCTCCAAGCATTCTCGCGATCAGCCTCTGCAGGACGTCGAGGGGCTTTTGAATAACTTACAGGACTGGGAATTGTCCTTCAAGGAGAAAGACAAAAAACTGAGAGTAGATGCTTTTGGAAAGGGAAAATTGGATCCCGTTCCTCCAAGTCAAGCAAGTCATAATATTTCTAGTCGACTTTCTGATAACCCTAGAGTTAACGGAAGACAGACAAGGGAAAAGACTTCTTCTTTTGACAATAAGGATAC...

Protein

2 records

下载 Protein FASTA

XP_057792082.1
MAKAPSKHSRDQPLQDVEGLLNNLQDWELSFKEKDKKLRVDAFGKGKLDPVPPSQASHNISSRLSDNPRVNGRQTREKTSSFDNKDTMRQHDYLKKYEALSQLPSGVSFQEGVVDANSEKELGNDFFKHKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFLDAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIDDVEFALRLEPQNQEIKKQYAECKALLEKEILKKASGALAGSSKGALQEKVVMDKKK...

XP_057792083.1
MAKAPSKHSRDQPLDVEGLLNNLQDWELSFKEKDKKLRVDAFGKGKLDPVPPSQASHNISSRLSDNPRVNGRQTREKTSSFDNKDTMRQHDYLKKYEALSQLPSGVSFQEGVVDANSEKELGNDFFKHKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKVKRFLDAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIDDVEFALRLEPQNQEIKKQYAECKALLEKEILKKASGALAGSSKGALQEKVVMDKKKH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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