当前解析结果
SmilChr01G002851| 统一新 Gene ID | SmilChr01G002851 |
|---|---|
| 名称 | SmilChr01G002851 |
| 描述 | uncharacterized SmilChr01G002851 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 47088589 - 47089658 / + |
| NCBI Gene ID | LOC131008983 |
|---|---|
| GeneID | 131008983 |
| locus_tag | - |
| NCBI Name | LOC131008983 |
| 原始查询 | LOC131008983 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=medium |
| 产物 | hit=Os06g0704400; species=rice; confidence=medium |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=23; qcov=1.13; evalue=1.55e-20; confidence=weak |
| Rice | Os06g0704400- identity=35.5; qcov=1.13; evalue=1.44e-52; confidence=medium |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008983 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057792131.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057792131.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792131.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792131.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792131.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:47088599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B72,B94,C74 |
Chr1:47088623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C7 |
Chr1:47088631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr1:47088675 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | B10,B30,C3,C34,C79 |
Chr1:47088675 |
AG |
A |
1bp_deletion | CDS_variant | 5 | B10,B30,C3,C34,C79 |
Chr1:47088679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B30,C3,C34,C79 |
Chr1:47088705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C7 |
Chr1:47088732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C7 |
Chr1:47088855 |
G |
A |
EMS_canonical_SNV | stop_gained | 31 | A23,A24,A6,B100,B110,B113,B118,B140,B22,B26,B47,B53,B57,B64,B7,B82,C11,C12,C13,C18,C21,C24,C29,C40,C42,C44,C69,C78,D2,D5,D7 |
Chr1:47088861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,A18,B98,C40 |
Chr1:47088874 |
C |
T |
EMS_canonical_SNV | stop_gained | 17 | B113,B124,B27,B36,B44,B49,B50,B54,B83,C10,C13,C3,C42,C52,C59,C60,C9 |
Chr1:47088882 |
G |
GAA |
2bp_insertion | frameshift_variant | 88 | A1,A18,A23,A6,A7,B100,B102,B105,B107,B11,B110,B111,B113,B118,B124,B125,B126,B127,B128,B131,B133,B140,B21,B22,B23,B3,B30,B31,B33,B34,B36,B42,B43,B47,B48,B52,B53,B58,B63,B69,B7,B72,B75,B78,B81,B82,B86,B88,B93,C11,C12,C13,C16,C17,C18,C21,C23,C24,C25,C26,C27,C29,C34,C36,C40,C41,C42,C45,C47,C48,C52,C53,C6,C61,C62,C66,C69,C71,C78,C79,C85,D10,D11,D3,D4,D6,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792131.1PF10551
MULE 44-139 aa
PF00872
Transposase_mut 59-148 aa
PF04434
SWIM 228-257 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792131.1 |
Pfam | PF10551 |
MULE | Domain | 44 | 139 | 2.3e-14 | 54.3 | MULE transposase domain |
XP_057792131.1 |
Pfam | PF00872 |
Transposase_mut | Family | 59 | 148 | 7.8e-05 | 22.4 | Transposase, Mutator family |
XP_057792131.1 |
Pfam | PF04434 |
SWIM | Domain | 228 | 257 | 6.9e-10 | 38.9 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。