当前解析结果
SmilChr02G005066| 统一新 Gene ID | SmilChr02G005066 |
|---|---|
| 名称 | SmilChr02G005066 |
| 描述 | uncharacterized SmilChr02G005066 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72332754 - 72335936 / - |
| NCBI Gene ID | LOC131009006 |
|---|---|
| GeneID | 131009006 |
| locus_tag | - |
| NCBI Name | LOC131009006 |
| 原始查询 | LOC131009006 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | T-box protein [Source:NCBI gene (formerly Entrezgene);Acc:832833]; symbol=AT5G27710; hit=AT5G27710; species=arabidopsis; confidence=high |
| 产物 | T-box protein [Source:NCBI gene (formerly Entrezgene);Acc:832833]; symbol=AT5G27710; hit=AT5G27710; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G27710 (AT5G27710)T-box protein [Source:NCBI gene (formerly Entrezgene);Acc:832833] identity=62.3; qcov=1.05; evalue=3.99e-146; confidence=high |
| Rice | Os07g0673000- identity=71; qcov=0.719; evalue=5.5e-124; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009006 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.60000 | XP_057792172.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057792172.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057792172.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792172.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792172.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72333148 |
TC |
T |
1bp_deletion | frameshift_variant | 7 | B104,B135,B78,C11,C20,C27,C69 |
Chr2:72333189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B64,B84,B94,C70 |
Chr2:72333195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C53 |
Chr2:72333357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B5,C30,D3 |
Chr2:72334086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:72335388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr2:72335402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr2:72335455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72335458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr2:72335528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:72335541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。