Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004909`

染色体: Chr02 坐标: 71099978-71104859 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004909`
名称	SmilChr02G004909
描述	NAP1-related protein 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71099978 - 71104859 / `-`

ID 对照

NCBI Gene ID	`LOC131009018`
GeneID	`131009018`
locus_tag	`-`
NCBI Name	`LOC131009018`
原始查询	`LOC131009018`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAP1-related protein 1
产物	NAP1-related protein 1
Arabidopsis	`AT1G18800` (NRP2) NAP1-related protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:838462] identity=76.2; qcov=0.87; evalue=8.89e-116; confidence=high
Rice	`Os02g0576700` (OsNAPL6) - identity=70.3; qcov=0.866; evalue=4.18e-111; confidence=high
GO	GO:0000785 (chromatin); GO:0003682 (chromatin binding); GO:0005634 (nucleus); GO:0006334 (nucleosome assembly); GO:0042393 (histone binding)
KEGG	-
Pfam	PF00956 (NAP)
InterPro	-
eggNOG	-
NR	GeneID:131009018

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792186.1`
2	Cytoplasm	细胞质	1.00000	`XP_057792186.1`
3	Cytosol	细胞质基质	1.00000	`XP_057792186.1`
4	Nucleoplasm	核质	0.40000	`XP_057792186.1`
5	Chromosome	染色体	0.00000	`XP_057792186.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71102192`	`GC`	`G`	1bp_deletion	frameshift_variant	251	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C15,C17,C18,C19,C2,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr2:71102194`	`AGC`	`A`	2bp_deletion	frameshift_variant	251	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C15,C17,C18,C19,C2,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr2:71102306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B134
`Chr2:71102318`	`TTG`	`T`	2bp_deletion	frameshift_variant	231	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A24,A25,A3,A4,A6,A8,A9,B10,B100,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B48,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B62,B63,B64,B65,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C17,C18,C19,C2,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C61,C63,C64,C65,C66,C68,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C79,C80,C81,C82,C83,C84,C85,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr2:71102322`	`T`	`TTA`	2bp_insertion	frameshift_variant	233	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A24,A25,A3,A4,A6,A8,A9,B10,B100,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B48,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B62,B63,B64,B65,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C17,C18,C19,C2,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C61,C63,C64,C65,C66,C68,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C79,C80,C81,C82,C83,C84,C85,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr2:71102390`	`A`	`AAT`	2bp_insertion	frameshift_variant	65	A1,A11,A14,A16,A22,A5,B100,B101,B103,B105,B109,B112,B121,B122,B129,B130,B134,B136,B20,B22,B28,B29,B3,B30,B31,B41,B48,B49,B5,B51,B54,B58,B6,B62,B65,B72,B73,B89,B94,B97,B98,C13,C15,C19,C20,C24,C27,C29,C3,C31,C4,C41,C44,C46,C50,C52,C54,C58,C69,C78,C80,C82,C9,D1,D9
`Chr2:71102392`	`TAG`	`T`	2bp_deletion	frameshift_variant	65	A1,A11,A14,A16,A22,A5,B100,B101,B103,B105,B109,B112,B121,B122,B129,B130,B134,B136,B20,B22,B28,B29,B3,B30,B31,B41,B48,B49,B5,B51,B54,B58,B6,B62,B65,B72,B73,B89,B94,B97,B98,C13,C15,C19,C20,C24,C27,C29,C3,C31,C4,C41,C44,C46,C50,C52,C54,C58,C69,C78,C80,C82,C9,D1,D9
`Chr2:71104462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792186.1

262 aa

131

262

NAP

PF00956 NAP 76-226 aa

XP_057792187.1

261 aa

130

261

NAP

PF00956 NAP 76-225 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792186.1`	Pfam	`PF00956`	NAP	Family	76	226	5.3e-35	121.7	Nucleosome assembly protein (NAP)
`XP_057792187.1`	Pfam	`PF00956`	NAP	Family	76	225	3.9e-34	118.8	Nucleosome assembly protein (NAP)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936203.1
CTAGAACTTTAAATAAAATTTAAGAGATTAGATAAGAAATTAAGGGCATAGATGGCAATCCAAACAAAATGGTAACATTAGATAGGGTTTACACAGTATATTGATGATGAGATTCTTTTGGATTATTGCAATTTGCCTTTTATTCTTTTCCATTTCCACTTTCTAATTTTTCTATGCATGATATTTTGCGAACTCGGGAACCCTAACCCTTATTATAATTTCCCATCTTCTCTGTTTTATTTCTCTCTCTCTCTCACTCT...

XM_057936204.1
TGATGATGAGATTCTTTTGGATTATTGCAATTTGCCTTTTATTCTTTTCCATTTCCACTTTCTAATTTTTCTATGCATGATATTTTGCGAACTCGGGAACCCTAACCCTTATTATAATTTCCCATCTTCTCTGTTTTATTTCTCTCTCTCTCTCACTCTTTGGGTTTATTTAGGGTTTAAGGACAGCGTTCAAAAATCAGTCGAAACCCAAACAGGAATTTCCTTTTTCCTGTAAATTTCTAGGGTTGCGGAGAGAAATG...

CDS

2 records

下载 CDS FASTA

LOC131009018
ATGGGAGCGGACAAAGGGAAGAAGCAGAAAGTGGGAGGAGCGGACGAAGAGAACAATGGCACCGAGCAGATTGACGGGGAGCTCGTCGTCTCAATTGAAAAGCTTCAGGAAATTCAAGACGAGCTTGAAAAGATCAATGAAGAAGCAAGTGAAAAGGTCCTGGAAGTGGAACAGAAGTACAATGAGATACGGAAACCTGTCTATGATAAGCGAAATGACATCATTAAATCCATTCCTGATTTCTGGTTGACTGCTTTTAT...

Protein

2 records

下载 Protein FASTA

XP_057792186.1
MGADKGKKQKVGGADEENNGTEQIDGELVVSIEKLQEIQDELEKINEEASEKVLEVEQKYNEIRKPVYDKRNDIIKSIPDFWLTAFMSHPALSELLTDEDQKIFKFLSNLEVEDCKDVKSGYSITFHFKPNPYFEDTKLTKTFTFLEEGTTKITATSIKWKEGMGIPNGVAAEEKKGNKRPHAEESFFSWFNDSQHSGDLEDIQDEQVAEIIKDDLWPNPLTYFNNEADEEEFEMDDDEDKDSDGSEDDDEQDDEDDDEV...

XP_057792187.1
MGADKGKKQKVGGADEENNGTEQIDGELVVSIEKLQEIQDELEKINEEASEKVLEVEQKYNEIRKPVYDKRNDIIKSIPDFWLTAFMSHPALSELLTDEDQKIFKFLSNLEVEDCKDVKSGYSITFHFKPNPYFEDTKLTKTFTFLEEGTTKITATSIKWKEGMGIPNGVAAEEKKGNKRPHAEESFFSWFNDSQHSGDLEDIQDEVAEIIKDDLWPNPLTYFNNEADEEEFEMDDDEDKDSDGSEDDDEQDDEDDDEVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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