Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004967`

染色体: Chr02 坐标: 71575960-71577118 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004967`
名称	SmilChr02G004967
描述	agamous-like MADS-box protein AGL80
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71575960 - 71577118 / `+`

ID 对照

NCBI Gene ID	`LOC131009024`
GeneID	`131009024`
locus_tag	`-`
NCBI Name	`LOC131009024`
原始查询	`LOC131009024`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	agamous-like MADS-box protein AGL80
产物	agamous-like MADS-box protein AGL80
Arabidopsis	`AT5G55690` (AT5G55690) MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:835663] identity=31; qcov=0.615; evalue=6.59e-19; confidence=low
Rice	`Os03g0582400` (MADS87) - identity=31.2; qcov=0.635; evalue=2.82e-16; confidence=low
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF)
InterPro	-
eggNOG	-
NR	GeneID:131009024

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792196.1`
2	Chromosome	染色体	0.00000	`XP_057792196.1`
3	Centromere	着丝粒	0.00000	`XP_057792196.1`
4	Chromatin	染色质	0.00000	`XP_057792196.1`
5	Telomere	端粒	0.00000	`XP_057792196.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71576188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr2:71576359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B35,B67,C5,C8
`Chr2:71576392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:71576492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:71576500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:71576523`	`C`	`CCA`	2bp_insertion	frameshift_variant	6	A2,A24,A7,B37,B40,C78
`Chr2:71576525`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B81
`Chr2:71576525`	`AC`	`A`	1bp_deletion	CDS_variant	1	B81
`Chr2:71576584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B114,D6
`Chr2:71576664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,B28,C60
`Chr2:71576706`	`TAG`	`T`	2bp_deletion	frameshift_variant	2	A8,C35
`Chr2:71576706`	`TAG`	`T`	2bp_deletion	CDS_variant	2	A8,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792196.1

252 aa

126

252

SRF-TF

PF00319 SRF-TF 11-52 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792196.1`	Pfam	`PF00319`	SRF-TF	Domain	11	52	1.9e-14	53.5	SRF-type transcription factor (DNA-binding and dimerisation domain)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936213.1
GACTATATATATTCAAAACAATCACAATGTAATAAATATAAATATAGCAATTAACAAAGAAAGTCACAAATAAGAGAAAGAAAAACATACTGAAATTTATAATCCTCTCTCAAAAACTCAAAAAGGAGATATGGGCAGAGGAAAGCTGAATATGGAACTCATAAGCAATGAGAAATCGAGAAACATAACCTTGAAGAAAAGGAAGGAGGGTTTGATCCGAAAGATGCAGGAATTCACGACGCTCTGCGATGTGAAGGCGT...

CDS

1 records

下载 CDS FASTA

LOC131009024
ATGGGCAGAGGAAAGCTGAATATGGAACTCATAAGCAATGAGAAATCGAGAAACATAACCTTGAAGAAAAGGAAGGAGGGTTTGATCCGAAAGATGCAGGAATTCACGACGCTCTGCGATGTGAAGGCGTGTATGATAATCTACACCCCCAATCAAATCGAGGCCGAGATCTGGCCCCAAAACGCCGACCAAGTCCACCGCATCATCGACATCTACAAATCCAAGGCCAAGGATTCCGGCAACAAGAGCTTCGGCGTCCC...

Protein

1 records

下载 Protein FASTA

XP_057792196.1
MGRGKLNMELISNEKSRNITLKKRKEGLIRKMQEFTTLCDVKACMIIYTPNQIEAEIWPQNADQVHRIIDIYKSKAKDSGNKSFGVPDFFHERKRKIEEELAKLRRKNLEAKYPTVPALLNVATETQLTHFSLLLADKAKYVRSRLQMLRNSRQAAALTTGFYYPPPPPPPPPPLEHMIPMNENINLFETIQFKRQLFFESAASGYWPPPPQPYMPPPQQHFSSSEEFIEYQMRNHYTSNAQDLNSIAWPNK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器