Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005042`

染色体: Chr02 坐标: 72142577-72145381 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005042`
名称	SmilChr02G005042
描述	single-stranded DNA-binding protein, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72142577 - 72145381 / `-`

ID 对照

NCBI Gene ID	`LOC131009027`
GeneID	`131009027`
locus_tag	`-`
NCBI Name	`LOC131009027`
原始查询	`LOC131009027`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	single-stranded DNA-binding protein, mitochondrial
产物	single-stranded DNA-binding protein%2C mitochondrial
Arabidopsis	`AT4G11060` (MTSSB) mitochondrially targeted single-stranded DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:826707] identity=66.8; qcov=1; evalue=4.7e-99; confidence=high
Rice	`Os05g0509700` (SSB) - identity=62.3; qcov=1.01; evalue=1.13e-90; confidence=high
GO	GO:0003697 (single-stranded DNA binding); GO:0006264 (mitochondrial DNA replication); GO:0042645 (mitochondrial nucleoid); GO:0051096 (positive regulation of helicase activity)
KEGG	-
Pfam	PF00436 (SSB)
InterPro	-
eggNOG	-
NR	GeneID:131009027

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057792202.1`
2	Nucleus	细胞核	0.00000	`XP_057792202.1`
3	Chromosome	染色体	0.00000	`XP_057792202.1`
4	Centromere	着丝粒	0.00000	`XP_057792202.1`
5	Chromatin	染色质	0.00000	`XP_057792202.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72142787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B110,B86,D6
`Chr2:72142804`	`GA`	`G`	1bp_deletion	frameshift_variant	18	A22,A4,A9,B114,B118,B137,B15,B27,B44,B48,B60,B79,C17,C57,C60,C62,C70,D6
`Chr2:72142858`	`GTA`	`G`	2bp_deletion	frameshift_variant	63	A10,A11,A14,A15,A22,A8,B100,B101,B11,B113,B121,B122,B126,B128,B132,B14,B140,B26,B27,B29,B35,B42,B43,B50,B53,B56,B58,B6,B64,B65,B73,B75,B78,B8,B81,B83,B86,B87,B93,B96,C2,C22,C26,C27,C38,C40,C46,C47,C49,C5,C50,C56,C59,C61,C63,C65,C67,C7,C72,C83,D1,D6,D9
`Chr2:72142880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:72144000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr2:72144172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:72144195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:72144301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,D3
`Chr2:72144304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:72144328`	`C`	`CT`	1bp_insertion	frameshift_variant	4	A19,B110,B86,D6
`Chr2:72144328`	`C`	`CT`	1bp_insertion	CDS_variant	4	A19,B110,B86,D6
`Chr2:72144331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B132,B24,B46,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792202.1

233 aa

116

233

SSB

PF00436 SSB 80-183 aa

XP_057792203.1

210 aa

105

210

SSB

PF00436 SSB 80-183 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792202.1`	Pfam	`PF00436`	SSB	Domain	80	183	2.7e-19	69.8	Single-strand binding protein family
`XP_057792203.1`	Pfam	`PF00436`	SSB	Domain	80	183	2.3e-19	70.0	Single-strand binding protein family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936220.1
CGTTCATAAACCCTTGCGATGCGCCTTCATTTCGTTACCTCTTAAACCCTTCTCAACTCTCTCTCTCTCTCTCAACTCCCATGAATTCACTCGCCCCTAAATTCCGTAATCTTCTCCGACTTCCTGATTTCTCCACTGCGGCGTGTCTGCAGAGGAGCTCGAAGGTTTTCTTCTCGACTGAGCCATTCGATTCGGGGAATACCCCTGACAAAGAGGGCCCAGACGCCCCGGAAATTGAGGATGATGATTTTCTCACCGAG...

XM_057936219.1
CGTTCATAAACCCTTGCGATGCGCCTTCATTTCGTTACCTCTTAAACCCTTCTCAACTCTCTCTCTCTCTCTCAACTCCCATGAATTCACTCGCCCCTAAATTCCGTAATCTTCTCCGACTTCCTGATTTCTCCACTGCGGCGTGTCTGCAGAGGAGCTCGAAGGTTTTCTTCTCGACTGAGCCATTCGATTCGGGGAATACCCCTGACAAAGAGGGCCCAGACGCCCCGGAAATTGAGGATGATGATTTTCTCACCGAG...

CDS

2 records

下载 CDS FASTA

LOC131009027
ATGAATTCACTCGCCCCTAAATTCCGTAATCTTCTCCGACTTCCTGATTTCTCCACTGCGGCGTGTCTGCAGAGGAGCTCGAAGGTTTTCTTCTCGACTGAGCCATTCGATTCGGGGAATACCCCTGACAAAGAGGGCCCAGACGCCCCGGAAATTGAGGATGATGATTTTCTCACCGAGAGGCCGGAGTTACAGCTCCAGGGCGTTGATCCCAGGAAAGGCTGGAATTTCCGCGGCGTGCACCGGGCTATTATATGTGG...

Protein

2 records

下载 Protein FASTA

XP_057792202.1
MNSLAPKFRNLLRLPDFSTAACLQRSSKVFFSTEPFDSGNTPDKEGPDAPEIEDDDFLTERPELQLQGVDPRKGWNFRGVHRAIICGKVGQAPIQKILRNGRTVTTFTVGTGGMFDQRTIGSQDLPKPAQWHRIAVHNTMLAAYAVQQIAKNSSVYVEGDIEIRVYNDSINGDIKSIPEICVRRDGRVRLIKAGESMSNISLDELRKFSYILVHSRSNFFNFFGFCNPFLLFD

XP_057792203.1
MNSLAPKFRNLLRLPDFSTAACLQRSSKVFFSTEPFDSGNTPDKEGPDAPEIEDDDFLTERPELQLQGVDPRKGWNFRGVHRAIICGKVGQAPIQKILRNGRTVTTFTVGTGGMFDQRTIGSQDLPKPAQWHRIAVHNTMLAAYAVQQIAKNSSVYVEGDIEIRVYNDSINGDIKSIPEICVRRDGRVRLIKAGESMSNISLDELREGLF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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