Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005008`

染色体: Chr02 坐标: 71890048-71893121 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005008`
名称	SmilChr02G005008
描述	uncharacterized SmilChr02G005008
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71890048 - 71893121 / `+`

ID 对照

NCBI Gene ID	`LOC131009033`
GeneID	`131009033`
locus_tag	`-`
NCBI Name	`LOC131009033`
原始查询	`LOC131009033`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosomal RNA-processing 7 protein [Source:NCBI gene (formerly Entrezgene);Acc:833863]; symbol=AT5G38720; hit=AT5G38720; species=arabidopsis; confidence=high
产物	ribosomal RNA-processing 7 protein [Source:NCBI gene (formerly Entrezgene);Acc:833863]; symbol=AT5G38720; hit=AT5G38720; species=arabidopsis; confidence=high
Arabidopsis	`AT5G38720` (AT5G38720) ribosomal RNA-processing 7 protein [Source:NCBI gene (formerly Entrezgene);Acc:833863] identity=63.8; qcov=0.683; evalue=7.33e-65; confidence=high
Rice	`Os02g0728700` - identity=61.8; qcov=0.757; evalue=7.07e-59; confidence=high
GO	GO:0000028 (ribosomal small subunit assembly); GO:0006364 (rRNA processing); GO:0032545 (CURI complex); GO:0034456 (UTP-C complex)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF12923 (RRP7)
InterPro	-
eggNOG	-
NR	GeneID:131009033

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792216.1`
2	Nucleolus	核仁	0.80000	`XP_057792216.1`
3	Chromosome	染色体	0.00000	`XP_057792216.1`
4	Centromere	着丝粒	0.00000	`XP_057792216.1`
5	Chromatin	染色质	0.00000	`XP_057792216.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71890808`	`AG`	`A`	1bp_deletion	CDS_variant	2	B5,D3
`Chr2:71891209`	`T`	`TA`	1bp_insertion	frameshift_variant	63	A18,A19,A25,A5,A7,B1,B100,B112,B115,B117,B123,B124,B126,B131,B135,B136,B17,B18,B19,B23,B24,B28,B33,B34,B38,B39,B40,B5,B52,B53,B64,B65,B75,B85,B86,B87,B90,B92,B94,B97,B99,C18,C25,C26,C29,C33,C35,C38,C54,C55,C57,C58,C61,C62,C70,C71,C74,C75,C79,C8,C83,D11,D7
`Chr2:71891242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,D3
`Chr2:71891243`	`G`	`GC`	1bp_insertion	frameshift_variant	1	B29
`Chr2:71891243`	`G`	`GC`	1bp_insertion	CDS_variant	1	B29
`Chr2:71891973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:71891978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,B5,D3
`Chr2:71892276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C46
`Chr2:71892359`	`AT`	`A`	1bp_deletion	frameshift_variant	20	A18,B103,B122,B124,B4,B42,B43,B54,B9,B95,C11,C14,C26,C29,C31,C64,C66,C69,C73,C86
`Chr2:71892380`	`C`	`CA`	1bp_insertion	frameshift_variant	11	A11,A13,A16,B12,B133,B27,B55,B78,C20,C23,C78
`Chr2:71892409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:71892412`	`G`	`GA`	1bp_insertion	frameshift_variant	11	A11,A13,A16,B12,B133,B27,B55,B78,C20,C23,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792216.1

218 aa

109

218

RRP7

PF12923 RRP7 95-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792216.1`	Pfam	`PF12923`	RRP7	Domain	95	218	1.2e-26	93.9	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936233.1
CTACCTACCCGCCCCGCCCCTCTCTTTCTTCTTCCTTCCCCCATCTTCTTCCTCAAGCCTCTGCAATCTATCTCTCATATCTTCTGTATTTTTTCTTTAAAGGGCGCGTGTCCGAACGCGCCAAACACCTTCCCCTTTTGACCCGAGGCGCCGTGGACGGGTCTCCGTCGACGTACCTTGATCCGGGGCGCCGAGGTCGCGTTGGAGATGCTCTTACATAATCAAACACCTAATTATTTTATTATTTTTTGAATAATTAA...

CDS

1 records

下载 CDS FASTA

LOC131009033
ATGGTCGAAACTCGCCATGTGAAAGATTCTAAACCTGAAGAATATGTTACAAATTCTGAAAGAATTAGCAACGGTGGTGCCACGAGGAACACCAAGAAAGGTAAGTCGAAAATTCCTGAAAGAAAGAAAAAGAAAAGGCAGCTAGTGTCAAATCACATATCCTCAGATAATCTGCTGGAAACAAGACAAGGAAATGTAGATGAAGAAGATGAAGTTTATCAGATGTCTTCAGGGGTTGAAGATTACTCTCGAGGAATGAA...

Protein

1 records

下载 Protein FASTA

XP_057792216.1
MVETRHVKDSKPEEYVTNSERISNGGATRNTKKGKSKIPERKKKKRQLVSNHISSDNLLETRQGNVDEEDEVYQMSSGVEDYSRGMKKWITLYHQSRPGLKVLQETIDDFLMAHEVREEQAKAERLAQAAEGGWTVVVHQKGRKKTTEAESGIAVGSVAQAAVLDKMGKKKKKEVGLDFYQFNRREVHRNEIMMLQSKFEQDKKRIQQMRAARKFRPY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器