Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004988`

染色体: Chr02 坐标: 71752724-71753546 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004988`
名称	SmilChr02G004988
描述	SKP1-like protein 11
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71752724 - 71753546 / `-`

ID 对照

NCBI Gene ID	`LOC131009041`
GeneID	`131009041`
locus_tag	`-`
NCBI Name	`LOC131009041`
原始查询	`LOC131009041`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SKP1-like protein 11
产物	SKP1-like protein 11
Arabidopsis	`AT4G34210` (SK11) SKP1-like 11 [Source:NCBI gene (formerly Entrezgene);Acc:829569] identity=51.4; qcov=0.859; evalue=4.8e-46; confidence=medium
Rice	`Os08g0375700` (OSK15) - identity=45.8; qcov=0.976; evalue=4.04e-42; confidence=medium
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process); GO:0097602 (cullin family protein binding)
KEGG	smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF01466 (Skp1); PF03931 (Skp1_POZ)
InterPro	-
eggNOG	-
NR	GeneID:131009041

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792228.1`
2	Nucleus	细胞核	0.60000	`XP_057792228.1`
3	Cytoplasm	细胞质	0.60000	`XP_057792228.1`
4	Chromosome	染色体	0.00000	`XP_057792228.1`
5	Centromere	着丝粒	0.00000	`XP_057792228.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71752889`	`GA`	`*`	1bp_deletion	CDS_variant	5	B68,B98,C72,C87,D3
`Chr2:71752900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr2:71752924`	`ACT`	`A`	2bp_deletion	frameshift_variant	4	B13,B78,C60,C9
`Chr2:71752924`	`ACT`	`A`	2bp_deletion	CDS_variant	4	B13,B78,C60,C9
`Chr2:71752952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:71753170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:71753234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C4,C47
`Chr2:71753246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B1,B140,C5
`Chr2:71753258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B30,B49,C15,C49
`Chr2:71753263`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C62
`Chr2:71753263`	`CG`	`C`	1bp_deletion	CDS_variant	1	C62
`Chr2:71753274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C4,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792228.1

170 aa

170

Skp1_POZ

Skp1

PF03931 Skp1_POZ 31-89 aa PF01466 Skp1 129-170 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792228.1`	Pfam	`PF03931`	Skp1_POZ	Domain	31	89	3.1e-20	72.8	Skp1 family, tetramerisation domain
`XP_057792228.1`	Pfam	`PF01466`	Skp1	Domain	129	170	2.3e-18	66.4	Skp1 family, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936245.1
TATAATTACATAACTTCTTATACCTATAAATACATAAGTACACATATAACTCTTTCCCTCACATCTTGAGTTTTATGTGCTTTTTCTGTCCATCCTATACTTTTTATCTCCCTGGTTTTTTAGATTTTGTAATGGCATCATCGTCGGCGTCTTCATCTGAGAAGAAGATGATCCTTTTGATTAGCAAGGAAGGGGAGACGTTCGAAATCGAGGAGGCCGCAGCTCTCCTTTCGGGGACTGTGCAGCACATGATCGAAGAC...

CDS

1 records

下载 CDS FASTA

LOC131009041
ATGTGCTTTTTCTGTCCATCCTATACTTTTTATCTCCCTGGTTTTTTAGATTTTGTAATGGCATCATCGTCGGCGTCTTCATCTGAGAAGAAGATGATCCTTTTGATTAGCAAGGAAGGGGAGACGTTCGAAATCGAGGAGGCCGCAGCTCTCCTTTCGGGGACTGTGCAGCACATGATCGAAGACGATTGCACCACAGGTGGAATCCCGCTGTCGAACGTCGATTCGGTGACTCTGGCGAAGGTGATCGAGTTCTGCAA...

Protein

1 records

下载 Protein FASTA

XP_057792228.1
MCFFCPSYTFYLPGFLDFVMASSSASSSEKKMILLISKEGETFEIEEAAALLSGTVQHMIEDDCTTGGIPLSNVDSVTLAKVIEFCKSHAASDDVETLKKFNSDYVNTVKDDQELLFDLVLAANYLDMKKLLDLMCQTIADMIREKSPEEIRKMFHITSEEEEALRKEYA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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