Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005006`

染色体: Chr02 坐标: 71853509-71854313 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005006`
名称	SmilChr02G005006
描述	SKP1-like protein 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71853509 - 71854313 / `+`

ID 对照

NCBI Gene ID	`LOC131009044`
GeneID	`131009044`
locus_tag	`-`
NCBI Name	`LOC131009044`
原始查询	`LOC131009044`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SKP1-like protein 1
产物	SKP1-like protein 1
Arabidopsis	`AT4G34210` (SK11) SKP1-like 11 [Source:NCBI gene (formerly Entrezgene);Acc:829569] identity=54; qcov=0.974; evalue=1.07e-54; confidence=high
Rice	`Os08g0375700` (OSK15) - identity=49.1; qcov=1.08; evalue=5.73e-53; confidence=high
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process); GO:0097602 (cullin family protein binding)
KEGG	smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF01466 (Skp1); PF03931 (Skp1_POZ)
InterPro	-
eggNOG	-
NR	GeneID:131009044

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792232.1`
2	Cytoplasm	细胞质	0.60000	`XP_057792232.1`
3	Nucleus	细胞核	0.40000	`XP_057792232.1`
4	Chromosome	染色体	0.00000	`XP_057792232.1`
5	Centromere	着丝粒	0.00000	`XP_057792232.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71853593`	`C`	`CGT`	2bp_insertion	frameshift_variant	1	B32
`Chr2:71853593`	`C`	`CGT`	2bp_insertion	CDS_variant	1	B32
`Chr2:71853639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:71853665`	`CT`	`C`	1bp_deletion	frameshift_variant	23	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B72,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853684`	`G`	`GAA`	2bp_insertion	frameshift_variant	23	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B72,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853698`	`A`	`ATT`	2bp_insertion	frameshift_variant	22	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853700`	`GA`	`G`	1bp_deletion	frameshift_variant	22	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853704`	`ATT`	`A`	2bp_deletion	frameshift_variant	22	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853712`	`ACC`	`A`	2bp_deletion	frameshift_variant	22	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853716`	`GT`	`G`	1bp_deletion	frameshift_variant	22	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853720`	`A`	`AG`	1bp_insertion	frameshift_variant	22	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B76,B80,C1,C36,C48,C54,C71
`Chr2:71853726`	`GC`	`G`	1bp_deletion	frameshift_variant	22	A19,A2,B12,B138,B15,B20,B21,B26,B29,B36,B45,B51,B56,B66,B69,B76,B80,C1,C36,C48,C54,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792232.1

156 aa

156

Skp1_POZ

Skp1

PF03931 Skp1_POZ 9-67 aa PF01466 Skp1 107-154 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792232.1`	Pfam	`PF03931`	Skp1_POZ	Domain	9	67	1e-18	68.0	Skp1 family, tetramerisation domain
`XP_057792232.1`	Pfam	`PF01466`	Skp1	Domain	107	154	1.9e-26	92.4	Skp1 family, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936249.1
ATTATCTCGTTAGTTTTTCAATTTTTTTAGATTTTAGAATCTTCATAGTTTTTCAAAAAAAAATAGATTCTGGAATGGCATCATCATCGGCTGAAAAGAAGATGATCCTTTTGATTAGCAAGGAAGGGGAGACGTTCGAAATCGAGGAGGCCGCAACTCTCCTTTCAGGGACTATGAAGCACATGATCGAAGACAATTGCACCACCGGTGGAATCCCGCTGTCGAACGTCGATTCGGTGACTCTGGCGAAGGTGATCGAG...

CDS

1 records

下载 CDS FASTA

LOC131009044
ATGGCATCATCATCGGCTGAAAAGAAGATGATCCTTTTGATTAGCAAGGAAGGGGAGACGTTCGAAATCGAGGAGGCCGCAACTCTCCTTTCAGGGACTATGAAGCACATGATCGAAGACAATTGCACCACCGGTGGAATCCCGCTGTCGAACGTCGATTCGGTGACTCTGGCGAAGGTGATCGAGTTCTGCAAAAGCCATGCCGCCAGCGACGACGTCGAGACTTTGAAGAAATTCGACTCCGACTACGTCAACATGGT...

Protein

1 records

下载 Protein FASTA

XP_057792232.1
MASSSAEKKMILLISKEGETFEIEEAATLLSGTMKHMIEDNCTTGGIPLSNVDSVTLAKVIEFCKSHAASDDVETLKKFDSDYVNMVKNDQKLMFDLVLAANYLDMKKLLDLMCQTIADMIREKSLEEIRKMFHIKNDYTPEEEEAVRKEYAWAFE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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