Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005070`

染色体: Chr02 坐标: 72370778-72372856 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005070`
名称	SmilChr02G005070
描述	uncharacterized SmilChr02G005070
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72370778 - 72372856 / `-`

ID 对照

NCBI Gene ID	`LOC131009068`
GeneID	`131009068`
locus_tag	`-`
NCBI Name	`LOC131009068`
原始查询	`LOC131009068`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829403]; symbol=AT4G32680; hit=AT4G32680; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829403]; symbol=AT4G32680; hit=AT4G32680; species=arabidopsis; confidence=low
Arabidopsis	`AT4G32680` (AT4G32680) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829403] identity=34.1; qcov=1.05; evalue=1.56e-33; confidence=low
Rice	`Os01g0863400` - identity=26.6; qcov=1.05; evalue=1.77e-20; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131009068

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057792248.1`
2	Nucleus membrane	核膜	0.80000	`XP_057792248.1`
3	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057792248.1`
4	Nucleus	细胞核	0.40000	`XP_057792248.1`
5	Nucleus inner membrane	Nucleus inner membrane	0.40000	`XP_057792248.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72371220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:72371342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:72371354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,C22
`Chr2:72371389`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B35
`Chr2:72371389`	`CA`	`C`	1bp_deletion	CDS_variant	1	B35
`Chr2:72371440`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B46,B61,C62,D11
`Chr2:72371486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,B94,C70
`Chr2:72371615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,B94,C70
`Chr2:72371685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr2:72371696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:72371737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr2:72371742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B46,B61,C62,C87,D11

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936266.1
GCTCCCAAACTTGGAAGAGTTACAACTTACAACTTACAACTAACTAAATTATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATCTCATCTCAAGAGAATAAAGGAGAAAACTAGTCAAGTAGATCACCGCTGCGCAATCTCTCTGAATATAGTAAATAATTAGTCAACTGAGTTCAATTAGGTCACCGGAATCCATGGCGACGGCGGCAACAACAGGAGGACCCAACCACGTCGCCAGGGAGGCGCGGCGACGTCGTA...

XM_057936265.1
GGGCTCCCAAACTTGGAAGAGTTACAACTTACAACTTACAACTAACTAAATTATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATCTCATCTCAAGAGAATAAAGGAGAAAACTAGTCAAGTAGATCACCGCTGCGCAATCTCTCTGAATATAGTAAATAATTAGTCAACTGAGTTCAATTAGGTCACCGGAATCCATGGCGACGGCGGCAACAACAGGAGGACCCAACCACGTCGCCAGGGAGGCGCGGCGACGTCG...

CDS

2 records

下载 CDS FASTA

LOC131009068
ATGGCGACGGCGGCAACAACAGGAGGACCCAACCACGTCGCCAGGGAGGCGCGGCGACGTCGTATAATCGAGCGGGGATCCGACCGCCTCGCCCTAATCTCTGGCCGCATCCAGTCCCTGCCGCCAGACCCCGACCAATCCATTTCTTCCACGTCTTCCCCTGCCCAAATCCCGGCCACTGATTCTTCTCCACATGAAGATGCAGCCTCTAATTCATTGCTACCAAATGAAGAATCTGTACAAGAACAAGGGCCGAACCA...

Protein

2 records

下载 Protein FASTA

XP_057792248.1
MATAATTGGPNHVAREARRRRIIERGSDRLALISGRIQSLPPDPDQSISSTSSPAQIPATDSSPHEDAASNSLLPNEESVQEQGPNHAVSDLAVEPPQLNSYNAGSSPSRSLEPLHDTNEESSQIPSSDNRPAQDRQLEQTHHSLFTPGQIRSAVAASENTRMFCSIAAAVLVIASYMGLPVGGFRGIILLRPFYLLLLTNMTIVLGRLILGARGIDSRTGRRRSSAPTAGGNDLADQLGRALELGLLMQKVLGAVSMDF...

XP_057792249.1
MATAATTGGPNHVAREARRRRIIERGSDRLALISGRIQSLPPDPDQSISSTSSPAQIPATDSSPHEDAASNSLLPNEESVQEQGPNHAVSDLAVEPPQLNSYNAGSSPSRSLEPLHDTNEESSQIPSSDNRPAQDRQLEQTHHSLFTPGQIRSAVAASENTRMFCSIAAAVLVIASYMGLPVGGFRGIILLRPFYLLLLTNMTIVLGRLILGARGIDSRTGRRRSSAPTAGGNDLADQLGRALELGLLMQKVLGAVSMDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器