Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005082`

染色体: Chr02 坐标: 72451388-72455322 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005082`
名称	SmilChr02G005082
描述	phosphatidylglycerophosphate phosphatase 1, chloroplastic/mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72451388 - 72455322 / `-`

ID 对照

NCBI Gene ID	`LOC131009079`
GeneID	`131009079`
locus_tag	`-`
NCBI Name	`LOC131009079`
原始查询	`LOC131009079`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylglycerophosphate phosphatase 1, chloroplastic/mitochondrial-like
产物	phosphatidylglycerophosphate phosphatase 1%2C chloroplastic/mitochondrial-like
Arabidopsis	`AT3G58830` (AT3G58830) haloacid dehalogenase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825052] identity=53.9; qcov=1.05; evalue=1.52e-106; confidence=high
Rice	`Os01g0796500` - identity=55.3; qcov=0.62; evalue=1.19e-68; confidence=high
GO	GO:0008962 (phosphatidylglycerophosphatase activity)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF09419 (PGP_phosphatase); PF13242 (Hydrolase_like)
InterPro	-
eggNOG	-
NR	GeneID:131009079

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057792265.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057792266.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057792265.1`
4	Nucleus	细胞核	0.00000	`XP_057792265.1`
5	Chromosome	染色体	0.00000	`XP_057792265.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72452700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B55,B61,C23
`Chr2:72452737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B140,B26
`Chr2:72453619`	`GA`	`G`	1bp_deletion	frameshift_variant	72	A1,A10,A14,A16,A20,A22,A23,A4,A7,A9,B101,B106,B113,B115,B119,B121,B126,B135,B15,B21,B27,B29,B3,B30,B33,B34,B37,B38,B39,B42,B43,B46,B49,B5,B52,B54,B58,B59,B60,B63,B7,B70,B71,B72,B79,B83,B85,B91,B94,B95,C15,C24,C3,C30,C34,C36,C38,C42,C45,C47,C55,C57,C59,C60,C62,C63,C72,C76,C84,C85,C9,D11
`Chr2:72453644`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	C14,C64,C66
`Chr2:72453644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C14,C64,C66
`Chr2:72453683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:72453686`	`TTA`	`T`	2bp_deletion	frameshift_variant	1	C55
`Chr2:72453686`	`TTA`	`T`	2bp_deletion	CDS_variant	1	C55
`Chr2:72453697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:72453702`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C47,C54,C74
`Chr2:72453702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C47,C54,C74
`Chr2:72453758`	`G`	`A`	EMS_canonical_SNV	stop_gained	10	B109,B32,B74,B90,B92,C10,C18,C5,C54,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792265.1

373 aa

186

373

PGP_phosphatase

Hydrolase_like

PF09419 PGP_phosphatase 141-289 aa PF13242 Hydrolase_like 243-285 aa

XP_057792266.1

337 aa

168

337

PGP_phosphatase

Hydrolase_like

PF09419 PGP_phosphatase 141-289 aa PF13242 Hydrolase_like 243-285 aa

XP_057792267.1

303 aa

152

303

PGP_phosphatase

Hydrolase_like

PF09419 PGP_phosphatase 141-289 aa PF13242 Hydrolase_like 243-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792265.1`	Pfam	`PF09419`	PGP_phosphatase	Family	141	289	6.2e-41	140.5	Mitochondrial PGP phosphatase
`XP_057792265.1`	Pfam	`PF13242`	Hydrolase_like	Domain	243	285	2.9e-06	27.8	HAD-hyrolase-like
`XP_057792266.1`	Pfam	`PF09419`	PGP_phosphatase	Family	141	289	4.4e-41	141.0	Mitochondrial PGP phosphatase
`XP_057792266.1`	Pfam	`PF13242`	Hydrolase_like	Domain	243	285	2.4e-06	28.1	HAD-hyrolase-like
`XP_057792267.1`	Pfam	`PF09419`	PGP_phosphatase	Family	141	289	3e-41	141.5	Mitochondrial PGP phosphatase
`XP_057792267.1`	Pfam	`PF13242`	Hydrolase_like	Domain	243	285	2.1e-06	28.3	HAD-hyrolase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009096396.1
TTCTCAAAAAAAATGAAAGCCTCAAATTGAGATTTCGAGAAGCCCAATGGACCTGGAAGCATTCCGCCATGGGTAGGTTCAGAATTCAGATGCCTTGGATTCTTGGCTTCACCTCCATTTCCCAAATTCGAGAATTTGTAGCTTTGCAATTTTCACCATATACAATATATATTTAAGCGCAGAAATTCCATGTTAATTTAATTATGCAATCCACTTCAATTTCTTCTTCATGGCACACTTGCTGCTACTATCCTGTTCCC...

XR_009096397.1
TTCTCAAAAAAAATGAAAGCCTCAAATTGAGATTTCGAGAAGCCCAATGGACCTGGAAGCATTCCGCCATGGGTAGGTTCAGAATTCAGATGCCTTGGATTCTTGGCTTCACCTCCATTTCCCAAATTCGAGAATTTGTAGCTTTGCAATTTTCACCATATACAATATATATTTAAGCGCAGAAATTCCATGTTAATTTAATTATGCAATCCACTTCAATTTCTTCTTCATGGCACACTTGCTGCTACTATCCTGTTCCC...

CDS

3 records

下载 CDS FASTA

LOC131009079
ATGCAATCCACTTCAATTTCTTCTTCATGGCACACTTGCTGCTACTATCCTGTTCCCAATAATATCTTCCACCACAATCCCCATCATCGTATTCCTAGCAAGATCACGATCAACTCGAGGCCTCGAAATTCCCAGTATACAAATCATAACGTTGTCGCACTAACCGCCACGCATAGTTGCAGCAAAGAACAAGAAAGCAAGCAGAAGCATAATCATCAAGAAAACAGCGAGTTCCTGCAGGATTTTTGCTCTTCCGCCGA...

Protein

3 records

下载 Protein FASTA

XP_057792265.1
MQSTSISSSWHTCCYYPVPNNIFHHNPHHRIPSKITINSRPRNSQYTNHNVVALTATHSCSKEQESKQKHNHQENSEFLQDFCSSAENQEPHFGEGERERGFGVDNQSGISSNMGWAELKAALGQRINFEGIACSFGIFSKDKQLAIPHVGVPDIRYIDWAELKNRGFQGVVFDKDNTITVPYSLSLWAPLGPTIEQCKSLFGSNIAVFSNSAGLSEYDPDGRKAGALEDAIGIKVIRHKMKKPAGTAEEIENTFGCESS...

XP_057792266.1
MQSTSISSSWHTCCYYPVPNNIFHHNPHHRIPSKITINSRPRNSQYTNHNVVALTATHSCSKEQESKQKHNHQENSEFLQDFCSSAENQEPHFGEGERERGFGVDNQSGISSNMGWAELKAALGQRINFEGIACSFGIFSKDKQLAIPHVGVPDIRYIDWAELKNRGFQGVVFDKDNTITVPYSLSLWAPLGPTIEQCKSLFGSNIAVFSNSAGLSEYDPDGRKAGALEDAIGIKVIRHKMKKPAGTAEEIENTFGCESS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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